Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8620_RS06695 Genome accession   NZ_AP028369
Coordinates   1299008..1299976 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294008..1304976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS06685 (B10666_13290) - 1295214..1297034 (+) 1821 WP_052804944.1 motility associated factor glycosyltransferase family protein -
  R8620_RS06690 (B10666_13300) - 1297110..1298840 (+) 1731 WP_052804844.1 flagellin A -
  R8620_RS06695 (B10666_13310) ceuB 1299008..1299976 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  R8620_RS06700 (B10666_13320) ceuC 1299969..1300907 (+) 939 WP_052804843.1 iron chelate uptake ABC transporter family permease subunit -
  R8620_RS06705 (B10666_13330) ceuD 1300904..1301659 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  R8620_RS06710 (B10666_13340) ceuB 1301672..1302664 (+) 993 WP_052804842.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8620_RS06715 (B10666_13350) - 1302819..1303040 (+) 222 WP_052804841.1 hypothetical protein -
  R8620_RS06720 - 1303041..1303320 (+) 280 Protein_1305 type II toxin-antitoxin system RelE/ParE family toxin -
  R8620_RS06730 (B10666_13370) - 1303683..1304237 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=93694 R8620_RS06695 WP_002874446.1 1299008..1299976(+) (ceuB) [Campylobacter jejuni strain BCH-10666]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93694 R8620_RS06695 WP_002874446.1 1299008..1299976(+) (ceuB) [Campylobacter jejuni strain BCH-10666]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment