Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ACEPM1_RS02055 Genome accession   NZ_CP168737
Coordinates   432482..435346 (-) Length   954 a.a.
NCBI ID   WP_011000381.1    Uniprot ID   Q8Y2B6
Organism   Ralstonia pseudosolanacearum strain RUN3149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427482..440346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM1_RS02025 (ACEPM1_02025) - 427816..428409 (+) 594 WP_019717494.1 adenine phosphoribosyltransferase -
  ACEPM1_RS02030 (ACEPM1_02030) - 428509..429129 (+) 621 WP_016724271.1 LysE family translocator -
  ACEPM1_RS02035 (ACEPM1_02035) - 429230..429715 (-) 486 WP_028852573.1 adenosine-specific kinase -
  ACEPM1_RS02040 (ACEPM1_02040) - 429910..430629 (-) 720 WP_143012696.1 hypothetical protein -
  ACEPM1_RS02045 (ACEPM1_02045) - 430677..431078 (-) 402 WP_152547434.1 hypothetical protein -
  ACEPM1_RS02050 (ACEPM1_02050) - 431139..432095 (-) 957 WP_071615631.1 IS5-like element IS1420 family transposase -
  ACEPM1_RS02055 (ACEPM1_02055) uvrA 432482..435346 (-) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  ACEPM1_RS02060 (ACEPM1_02060) - 435569..436732 (+) 1164 WP_082240033.1 MFS transporter -
  ACEPM1_RS02065 (ACEPM1_02065) - 436780..437322 (+) 543 WP_028852576.1 single-stranded DNA-binding protein -
  ACEPM1_RS02070 (ACEPM1_02070) - 437492..438066 (+) 575 Protein_411 transposase -
  ACEPM1_RS02075 (ACEPM1_02075) - 438177..438335 (+) 159 WP_162903574.1 hypothetical protein -
  ACEPM1_RS02080 (ACEPM1_02080) - 438482..438739 (-) 258 WP_011000385.1 hypothetical protein -
  ACEPM1_RS02085 (ACEPM1_02085) - 438769..439278 (-) 510 WP_016724277.1 hotdog family protein -
  ACEPM1_RS02090 (ACEPM1_02090) - 439275..440096 (-) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105656.19 Da        Isoelectric Point: 6.9429

>NTDB_id=936878 ACEPM1_RS02055 WP_011000381.1 432482..435346(-) (uvrA) [Ralstonia pseudosolanacearum strain RUN3149]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=936878 ACEPM1_RS02055 WP_011000381.1 432482..435346(-) (uvrA) [Ralstonia pseudosolanacearum strain RUN3149]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAACCAGCTGGT
GGTCATCACGGGGCTGTCGGGATCGGGCAAGTCGTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCACTGTCGGCCTATGCGCGGCAGTTCCTGCAACTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAACAGAAGGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAGAGCGTGTCGC
AGATGGTGGATGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAGCACGTGGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAAGCCAAGGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAGACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTGGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAGAGCCTGGCGGCGTTCTACGACTTCGACACCGACACGCCGTTCGAAGAGCT
GCCCAGTGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAACGCGGCC
GCACCACGGTGCGCGAGCATGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAACTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAGGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCCATCTACGAGATCAACGGCTGGCCGCTGCGCGATGCGCTCACAT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTAAAC
TTCCTGAACAACGTCGGGCTCGACTACCTCTCGCTGGAGCGCAGCGCCGACACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAGGG
CACGCCCAGGCAGATCGAGCGGTCACCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCA
AGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTATCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCGCGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAGGTCATCAACGTCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTATGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCGTGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTTCTGCCCGACGTGTACGTGCCCT
GCGACGTGTGCCACGGCAAGCGCTACAACCGCGAGACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCACAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCGACCACCGGCCTGCACTTCCACGACATCGAG
CTGCTGCTCAAGGTGATCCACAAGCTGCGCGACCAGGGCAACACGGTCGTCATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCACGCCGGAGG
AGGTGGCCAAGAGCCGCGCGAGCTTTACCGGCAAGTATCTGGCGCCGTTGCTCAAGCGCAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-245)

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae TIGR4

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae D39

56.917

99.266

0.565