Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G11_RS09015 Genome accession   NZ_CP145071
Coordinates   1736425..1736853 (+) Length   142 a.a.
NCBI ID   WP_172763276.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_J_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731425..1741853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G11_RS08985 (V5G11_08995) - 1731693..1733144 (-) 1452 WP_033909284.1 spermidine synthase -
  V5G11_RS08990 (V5G11_09000) - 1733167..1733787 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5G11_RS08995 (V5G11_09005) - 1733986..1734362 (-) 377 Protein_1749 transposase -
  V5G11_RS09000 (V5G11_09010) - 1734671..1734796 (-) 126 Protein_1750 IS110 family transposase -
  V5G11_RS09005 (V5G11_09015) - 1735338..1735775 (+) 438 Protein_1751 pilin -
  V5G11_RS09010 (V5G11_09020) - 1735909..1736286 (+) 378 Protein_1752 pilin -
  V5G11_RS09015 (V5G11_09025) pilE 1736425..1736853 (+) 429 WP_172763276.1 pilin Machinery gene
  V5G11_RS09020 (V5G11_09030) - 1736880..1737221 (+) 342 Protein_1754 pilin -
  V5G11_RS09025 (V5G11_09035) pilE 1737278..1737571 (+) 294 WP_353403454.1 pilin Machinery gene
  V5G11_RS09030 (V5G11_09040) - 1737839..1738216 (+) 378 Protein_1756 pilin -
  V5G11_RS09035 (V5G11_09050) lpxC 1738740..1739663 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G11_RS09040 (V5G11_09055) - 1739791..1740192 (+) 402 Protein_1758 pilin -
  V5G11_RS09045 (V5G11_09060) - 1740315..1740433 (+) 119 Protein_1759 pilin -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15309.88 Da        Isoelectric Point: 9.0582

>NTDB_id=936865 V5G11_RS09015 WP_172763276.1 1736425..1736853(+) (pilE) [Neisseria gonorrhoeae strain WHO_J_2024]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYPNHGEWPKNNASAGVASSASDIKGKYVQSVTVANGVVTATMNSSGVNKEI
QGKKLSLWAKRQDGSVKWFCGRPVQRNANDANNDDVTADDKNNNGIDTKHLPSTCRDTSSAK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=936865 V5G11_RS09015 WP_172763276.1 1736425..1736853(+) (pilE) [Neisseria gonorrhoeae strain WHO_J_2024]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCCGAATCACGGCGAATGGCCGAAAAACAACGCTTCTGCCGGCGTGGCATCCTCCGCCTCCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTCACCGCCACAATGAATTCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTCAGCGCAA
CGCCAACGACGCCAACAACGACGACGTCACCGCCGACGACAAAAACAACAACGGCATCGACACCAAGCACCTGCCGTCAA
CCTGCCGTGATACGTCATCTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.535

100

0.725
  pilE Neisseria gonorrhoeae MS11

66.667

99.296

0.662