Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | V5G11_RS04285 | Genome accession | NZ_CP145071 |
| Coordinates | 841844..843589 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain WHO_J_2024 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 790043..849030 | 841844..843589 | within | 0 |
| IS/Tn | 844276..845277 | 841844..843589 | flank | 687 |
Gene organization within MGE regions
Location: 790043..849030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V5G11_RS04000 (V5G11_04005) | zwf | 790043..791488 (+) | 1446 | WP_003688733.1 | glucose-6-phosphate dehydrogenase | - |
| V5G11_RS04005 (V5G11_04010) | pgl | 791640..792335 (+) | 696 | WP_003688731.1 | 6-phosphogluconolactonase | - |
| V5G11_RS04010 (V5G11_04015) | - | 792316..793302 (+) | 987 | WP_003688729.1 | glucokinase | - |
| V5G11_RS04015 (V5G11_04020) | hexR | 793351..794199 (+) | 849 | WP_003688727.1 | DNA-binding transcriptional regulator HexR | - |
| V5G11_RS04020 (V5G11_04025) | pgi | 794425..796071 (+) | 1647 | WP_003691225.1 | glucose-6-phosphate isomerase | - |
| V5G11_RS04025 (V5G11_04030) | - | 796849..797301 (+) | 453 | WP_025455797.1 | DUF1311 domain-containing protein | - |
| V5G11_RS04030 (V5G11_04035) | - | 797331..797486 (+) | 156 | WP_323168595.1 | hypothetical protein | - |
| V5G11_RS04035 (V5G11_04040) | - | 797591..797974 (+) | 384 | WP_003691223.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| V5G11_RS04040 (V5G11_04045) | - | 798058..798192 (-) | 135 | Protein_789 | DNA helicase UvrD | - |
| V5G11_RS04045 (V5G11_04050) | - | 798293..798457 (-) | 165 | Protein_790 | DNA helicase UvrD | - |
| V5G11_RS04050 (V5G11_04055) | - | 798436..799049 (-) | 614 | Protein_791 | hypothetical protein | - |
| V5G11_RS04055 | - | 799134..799413 (+) | 280 | Protein_792 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| V5G11_RS04060 (V5G11_04070) | - | 799421..799732 (+) | 312 | WP_012503658.1 | HigA family addiction module antitoxin | - |
| V5G11_RS04065 (V5G11_04075) | - | 799748..800077 (-) | 330 | WP_003691215.1 | hypothetical protein | - |
| V5G11_RS04070 (V5G11_04080) | - | 800189..802376 (-) | 2188 | Protein_795 | pyocin knob domain-containing protein | - |
| V5G11_RS04075 (V5G11_04085) | - | 802416..802910 (-) | 495 | WP_228547146.1 | phage tail protein | - |
| V5G11_RS04080 (V5G11_04090) | - | 802795..803850 (-) | 1056 | WP_003691212.1 | baseplate J/gp47 family protein | - |
| V5G11_RS04085 (V5G11_04095) | - | 803871..804197 (-) | 327 | WP_003688709.1 | GPW/gp25 family protein | - |
| V5G11_RS04090 (V5G11_04100) | - | 804194..804718 (-) | 525 | WP_010360161.1 | phage baseplate assembly protein V | - |
| V5G11_RS04095 (V5G11_04105) | - | 804903..805115 (-) | 213 | WP_002243493.1 | helix-turn-helix transcriptional regulator | - |
| V5G11_RS04100 (V5G11_04110) | - | 805170..805840 (-) | 671 | Protein_801 | IS1595 family transposase | - |
| V5G11_RS04105 (V5G11_04115) | - | 805846..806130 (-) | 285 | WP_003706224.1 | hypothetical protein | - |
| V5G11_RS04110 (V5G11_04120) | - | 806167..806430 (-) | 264 | WP_003688704.1 | hypothetical protein | - |
| V5G11_RS04115 (V5G11_04125) | - | 806450..806698 (-) | 249 | WP_003695320.1 | hypothetical protein | - |
| V5G11_RS04120 (V5G11_04130) | - | 806659..807729 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| V5G11_RS04125 (V5G11_04135) | - | 807938..808717 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| V5G11_RS04130 (V5G11_04140) | dinB | 809617..810675 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| V5G11_RS04135 (V5G11_04145) | rep | 810745..812760 (-) | 2016 | WP_241532589.1 | DNA helicase Rep | - |
| V5G11_RS04140 (V5G11_04150) | aroD | 812780..813544 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| V5G11_RS04145 (V5G11_04155) | recA | 813744..814790 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| V5G11_RS04150 (V5G11_04160) | - | 815443..815778 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| V5G11_RS04155 (V5G11_04165) | dnaX | 815859..817982 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| V5G11_RS04160 (V5G11_04170) | mutL | 818077..820053 (-) | 1977 | WP_003701344.1 | DNA mismatch repair endonuclease MutL | - |
| V5G11_RS04165 (V5G11_04175) | - | 820197..820382 (+) | 186 | WP_003698474.1 | DUF3460 family protein | - |
| V5G11_RS04170 (V5G11_04180) | - | 820393..821061 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| V5G11_RS04175 (V5G11_04185) | - | 821061..821774 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| V5G11_RS04180 (V5G11_04190) | purE | 821822..822307 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| V5G11_RS04185 (V5G11_04195) | - | 822519..823330 (-) | 812 | Protein_818 | transposase | - |
| V5G11_RS04190 (V5G11_04200) | - | 823701..824066 (+) | 366 | Protein_819 | transposase | - |
| V5G11_RS04195 (V5G11_04205) | - | 824088..825092 (+) | 1005 | Protein_820 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| V5G11_RS04200 (V5G11_04210) | - | 825293..825949 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| V5G11_RS04205 (V5G11_04215) | - | 825946..827715 (-) | 1770 | WP_003695308.1 | histidine kinase | - |
| V5G11_RS04210 (V5G11_04220) | - | 827922..828536 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| V5G11_RS04215 (V5G11_04225) | - | 828699..829316 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| V5G11_RS04220 (V5G11_04230) | - | 829324..830187 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| V5G11_RS04225 (V5G11_04235) | - | 830200..830634 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| V5G11_RS04230 (V5G11_04240) | rpe | 830780..831463 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| V5G11_RS04235 (V5G11_04245) | ruvB | 831708..832739 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| V5G11_RS04240 (V5G11_04250) | - | 832821..833129 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| V5G11_RS04245 (V5G11_04255) | - | 833548..834780 (-) | 1233 | WP_003701338.1 | multifunctional CCA addition/repair protein | - |
| V5G11_RS04250 (V5G11_04260) | - | 834859..836487 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| V5G11_RS04255 (V5G11_04265) | - | 836637..837011 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| V5G11_RS04260 (V5G11_04270) | - | 837060..838598 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| V5G11_RS04265 (V5G11_04275) | recR | 838665..839282 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| V5G11_RS04270 (V5G11_04280) | - | 839338..839616 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| V5G11_RS04275 (V5G11_04285) | - | 839842..841089 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| V5G11_RS04280 (V5G11_04290) | lolD | 841082..841777 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| V5G11_RS04285 (V5G11_04295) | recD | 841844..843589 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| V5G11_RS04290 (V5G11_04300) | - | 843661..844307 (-) | 647 | Protein_839 | methyltransferase | - |
| V5G11_RS04295 (V5G11_04305) | - | 844315..845277 (+) | 963 | WP_146711087.1 | transposase | - |
| V5G11_RS04300 (V5G11_04310) | - | 845410..845865 (-) | 456 | Protein_841 | methyltransferase | - |
| V5G11_RS04305 (V5G11_04315) | lon | 846117..848579 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| V5G11_RS04310 (V5G11_04320) | - | 848761..849030 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=936850 V5G11_RS04285 WP_003688652.1 841844..843589(+) (recD) [Neisseria gonorrhoeae strain WHO_J_2024]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=936850 V5G11_RS04285 WP_003688652.1 841844..843589(+) (recD) [Neisseria gonorrhoeae strain WHO_J_2024]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |