Detailed information NTG0936834

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEPM2_RS06655
• Genome accession: NZ_CP168735
• Coordinates: 1371010..1372143 (+)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain RUN3223
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1366010..1377143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM2_RS06630 (ACEPM2_06630)	-	1366086..1367192 (+)	1107	WP_019718025.1	alkene reductase	-
ACEPM2_RS06635 (ACEPM2_06635)	-	1367270..1368244 (-)	975	WP_011001153.1	NADPH:quinone oxidoreductase family protein	-
ACEPM2_RS06640 (ACEPM2_06640)	surE	1368436..1369191 (+)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
ACEPM2_RS06645 (ACEPM2_06645)	-	1369207..1370172 (+)	966	WP_011001155.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEPM2_RS06650 (ACEPM2_06650)	-	1370174..1371001 (+)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEPM2_RS06655 (ACEPM2_06655)	rpoS	1371010..1372143 (+)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ACEPM2_RS06660 (ACEPM2_06660)	-	1372177..1373046 (-)	870	WP_011001158.1	endonuclease/exonuclease/phosphatase family protein	-
ACEPM2_RS06665 (ACEPM2_06665)	rlmD	1373201..1374553 (+)	1353	WP_011001159.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACEPM2_RS06670 (ACEPM2_06670)	-	1374638..1375339 (-)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
ACEPM2_RS06675 (ACEPM2_06675)	ndk	1375708..1376133 (+)	426	WP_011001161.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=936834 ACEPM2_RS06655 WP_011001157.1 1371010..1372143(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN3223]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=936834 ACEPM2_RS06655 WP_011001157.1 1371010..1372143(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN3223]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAGGCTGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCACGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGAATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGATCTGGATCCGGGCACTAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTATCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374