Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8620_RS05410 Genome accession   NZ_AP028369
Coordinates   1039832..1040380 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1034832..1045380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS05375 (B10666_10640) - 1035023..1035448 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8620_RS05380 - 1035512..1036132 (+) 621 Protein_1040 NAD(P)H-dependent oxidoreductase -
  R8620_RS05385 (B10666_10670) - 1036132..1036736 (+) 605 Protein_1041 NAD(P)H-dependent oxidoreductase -
  R8620_RS05390 (B10666_10680) pgsA 1036861..1037397 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8620_RS05395 (B10666_10690) rseP 1037394..1038500 (+) 1107 WP_002895962.1 RIP metalloprotease RseP -
  R8620_RS05400 (B10666_10700) - 1038493..1039359 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  R8620_RS05405 (B10666_10710) rpsF 1039446..1039823 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8620_RS05410 (B10666_10720) ssb 1039832..1040380 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R8620_RS05415 (B10666_10730) rpsR 1040391..1040651 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8620_RS05420 (B10666_10740) lon 1040711..1043086 (-) 2376 WP_002853487.1 endopeptidase La -
  R8620_RS05425 (B10666_10750) - 1043103..1043750 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R8620_RS05430 (B10666_10760) fliW 1043911..1044300 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8620_RS05435 (B10666_10770) proC 1044300..1045031 (+) 732 WP_002854026.1 pyrroline-5-carboxylate reductase Machinery gene
  R8620_RS05440 (B10666_10780) ctsT 1045028..1045330 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=93679 R8620_RS05410 WP_002854048.1 1039832..1040380(+) (ssb) [Campylobacter jejuni strain BCH-10666]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93679 R8620_RS05410 WP_002854048.1 1039832..1040380(+) (ssb) [Campylobacter jejuni strain BCH-10666]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment