Detailed information NTG0936772

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEPM4_RS06225
• Genome accession: NZ_CP168733
• Coordinates: 1290744..1291877 (+)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain RUN5935
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1285744..1296877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM4_RS06200 (ACEPM4_06200)	-	1285820..1286926 (+)	1107	WP_019718025.1	alkene reductase	-
ACEPM4_RS06205 (ACEPM4_06205)	-	1287004..1287978 (-)	975	WP_197346375.1	NADPH:quinone oxidoreductase family protein	-
ACEPM4_RS06210 (ACEPM4_06210)	surE	1288170..1288925 (+)	756	WP_058906986.1	5'/3'-nucleotidase SurE	-
ACEPM4_RS06215 (ACEPM4_06215)	-	1288941..1289906 (+)	966	WP_071089383.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEPM4_RS06220 (ACEPM4_06220)	-	1289908..1290735 (+)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEPM4_RS06225 (ACEPM4_06225)	rpoS	1290744..1291877 (+)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ACEPM4_RS06230 (ACEPM4_06230)	-	1291911..1292780 (-)	870	WP_354535946.1	endonuclease/exonuclease/phosphatase family protein	-
ACEPM4_RS06235 (ACEPM4_06235)	rlmD	1292935..1294287 (+)	1353	WP_020831713.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACEPM4_RS06240 (ACEPM4_06240)	-	1294371..1295072 (-)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
ACEPM4_RS06245 (ACEPM4_06245)	ndk	1295441..1295866 (+)	426	WP_011001161.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=936772 ACEPM4_RS06225 WP_011001157.1 1290744..1291877(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN5935]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=936772 ACEPM4_RS06225 WP_011001157.1 1290744..1291877(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN5935]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374