Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACEPM4_RS05180 Genome accession   NZ_CP168733
Coordinates   1082681..1083724 (-) Length   347 a.a.
NCBI ID   WP_011000966.1    Uniprot ID   Q8Y0M9
Organism   Ralstonia pseudosolanacearum strain RUN5935     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077681..1088724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM4_RS05170 (ACEPM4_05170) - 1079580..1081670 (+) 2091 WP_011000964.1 site-specific recombinase -
  ACEPM4_RS05175 (ACEPM4_05175) rbsK 1081697..1082644 (-) 948 WP_011000965.1 ribokinase -
  ACEPM4_RS05180 (ACEPM4_05180) cytR 1082681..1083724 (-) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  ACEPM4_RS05185 (ACEPM4_05185) - 1083744..1084790 (-) 1047 WP_028860379.1 ABC transporter permease -
  ACEPM4_RS05190 (ACEPM4_05190) - 1084780..1086351 (-) 1572 WP_011000968.1 sugar ABC transporter ATP-binding protein -
  ACEPM4_RS05195 (ACEPM4_05195) - 1086387..1087346 (-) 960 WP_028852852.1 sugar ABC transporter substrate-binding protein -
  ACEPM4_RS05200 (ACEPM4_05200) iscR 1087754..1088335 (+) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37288.37 Da        Isoelectric Point: 6.9310

>NTDB_id=936767 ACEPM4_RS05180 WP_011000966.1 1082681..1083724(-) (cytR) [Ralstonia pseudosolanacearum strain RUN5935]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=936767 ACEPM4_RS05180 WP_011000966.1 1082681..1083724(-) (cytR) [Ralstonia pseudosolanacearum strain RUN5935]
ATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCACGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGATCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGCCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAGACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACCACGGCCTCAACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36