Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACEPM4_RS03505 Genome accession   NZ_CP168733
Coordinates   734526..734894 (+) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain RUN5935     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729526..739894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM4_RS03480 (ACEPM4_03480) - 730017..730643 (-) 627 WP_016723449.1 LemA family protein -
  ACEPM4_RS03485 (ACEPM4_03485) dapA 731024..731938 (+) 915 WP_028852677.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACEPM4_RS03490 (ACEPM4_03490) hemL 732041..733342 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACEPM4_RS03495 (ACEPM4_03495) - 733554..733736 (+) 183 WP_003261842.1 rubredoxin -
  ACEPM4_RS03500 (ACEPM4_03500) pilG 734051..734494 (+) 444 WP_071615340.1 response regulator Regulator
  ACEPM4_RS03505 (ACEPM4_03505) pilH 734526..734894 (+) 369 WP_003269243.1 response regulator Machinery gene
  ACEPM4_RS03510 (ACEPM4_03510) - 734953..735498 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  ACEPM4_RS03515 (ACEPM4_03515) - 735744..737975 (+) 2232 WP_354536119.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=936765 ACEPM4_RS03505 WP_003269243.1 734526..734894(+) (pilH) [Ralstonia pseudosolanacearum strain RUN5935]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=936765 ACEPM4_RS03505 WP_003269243.1 734526..734894(+) (pilH) [Ralstonia pseudosolanacearum strain RUN5935]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434