Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | V5F91_RS03890 | Genome accession | NZ_CP145064 |
| Coordinates | 762625..764370 (+) | Length | 581 a.a. |
| NCBI ID | WP_196961867.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain WHO_S_2024 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 727441..802931 | 762625..764370 | within | 0 |
| IS/Tn | 765057..766058 | 762625..764370 | flank | 687 |
Gene organization within MGE regions
Location: 727441..802931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V5F91_RS03720 (V5F91_03735) | - | 727441..728511 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| V5F91_RS03725 (V5F91_03740) | - | 728720..729499 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| V5F91_RS03730 (V5F91_03745) | - | 730091..730300 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| V5F91_RS03735 (V5F91_03750) | dinB | 730399..731457 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| V5F91_RS03740 (V5F91_03755) | rep | 731527..733542 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| V5F91_RS03745 (V5F91_03760) | aroD | 733562..734326 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| V5F91_RS03750 (V5F91_03765) | recA | 734526..735572 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| V5F91_RS03755 (V5F91_03770) | - | 736225..736560 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| V5F91_RS03760 (V5F91_03775) | dnaX | 736641..738764 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| V5F91_RS03765 (V5F91_03780) | mutL | 738859..740835 (-) | 1977 | WP_353174446.1 | DNA mismatch repair endonuclease MutL | - |
| V5F91_RS03770 (V5F91_03785) | - | 740979..741164 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| V5F91_RS03775 (V5F91_03790) | - | 741175..741843 (+) | 669 | WP_003697105.1 | class I SAM-dependent methyltransferase | - |
| V5F91_RS03780 (V5F91_03795) | - | 741843..742556 (+) | 714 | WP_082277548.1 | tol-pal system YbgF family protein | - |
| V5F91_RS03785 (V5F91_03800) | purE | 742604..743089 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| V5F91_RS03790 (V5F91_03805) | - | 743301..744166 (-) | 866 | Protein_744 | transposase | - |
| V5F91_RS03795 (V5F91_03810) | - | 744483..744848 (+) | 366 | Protein_745 | transposase | - |
| V5F91_RS03800 (V5F91_03815) | - | 744870..745874 (+) | 1005 | Protein_746 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| V5F91_RS03805 (V5F91_03820) | - | 746075..746731 (-) | 657 | WP_003697102.1 | response regulator transcription factor | - |
| V5F91_RS03810 (V5F91_03825) | - | 746728..748497 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| V5F91_RS03815 (V5F91_03830) | - | 748704..749318 (+) | 615 | WP_115176791.1 | molybdenum cofactor guanylyltransferase | - |
| V5F91_RS03820 (V5F91_03835) | - | 749480..750097 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| V5F91_RS03825 (V5F91_03840) | - | 750105..750968 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| V5F91_RS03830 (V5F91_03845) | - | 750981..751415 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| V5F91_RS03835 (V5F91_03850) | rpe | 751561..752244 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| V5F91_RS03840 (V5F91_03855) | ruvB | 752489..753520 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| V5F91_RS03845 (V5F91_03860) | - | 753602..753910 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| V5F91_RS03850 (V5F91_03865) | - | 754329..755561 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| V5F91_RS03855 (V5F91_03870) | - | 755640..757268 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| V5F91_RS03860 (V5F91_03875) | - | 757418..757792 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| V5F91_RS03865 (V5F91_03880) | - | 757841..759379 (+) | 1539 | WP_050305215.1 | SurA N-terminal domain-containing protein | - |
| V5F91_RS03870 (V5F91_03885) | recR | 759446..760063 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| V5F91_RS03875 (V5F91_03890) | - | 760119..760397 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| V5F91_RS03880 (V5F91_03895) | - | 760623..761870 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| V5F91_RS03885 (V5F91_03900) | lolD | 761863..762558 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| V5F91_RS03890 (V5F91_03905) | recD | 762625..764370 (+) | 1746 | WP_196961867.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| V5F91_RS03895 (V5F91_03910) | - | 764442..765088 (-) | 647 | Protein_765 | methyltransferase | - |
| V5F91_RS03900 (V5F91_03915) | - | 765096..766058 (+) | 963 | WP_353174498.1 | IS110-like element ISNgo2 family transposase | - |
| V5F91_RS03905 (V5F91_03920) | - | 766191..766646 (-) | 456 | Protein_767 | methyltransferase | - |
| V5F91_RS03910 (V5F91_03925) | lon | 766898..769360 (+) | 2463 | WP_353174450.1 | endopeptidase La | - |
| V5F91_RS03915 (V5F91_03930) | - | 769542..769811 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| V5F91_RS03920 (V5F91_03935) | - | 769988..770422 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| V5F91_RS03925 (V5F91_03940) | - | 770415..771722 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| V5F91_RS03930 (V5F91_03945) | - | 771918..772289 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| V5F91_RS03935 (V5F91_03950) | - | 772366..774288 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| V5F91_RS03940 (V5F91_03955) | - | 774275..774670 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| V5F91_RS03945 (V5F91_03960) | - | 774761..775273 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| V5F91_RS03950 (V5F91_03965) | - | 775718..776413 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| V5F91_RS03955 (V5F91_03970) | traD | 776403..778445 (-) | 2043 | WP_047919030.1 | type IV conjugative transfer system coupling protein TraD | - |
| V5F91_RS03960 (V5F91_03975) | mobH | 778442..780994 (-) | 2553 | WP_353174452.1 | MobH family relaxase | - |
| V5F91_RS03965 (V5F91_03980) | - | 780991..781410 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| V5F91_RS03970 (V5F91_03985) | - | 781921..782382 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| V5F91_RS03975 (V5F91_03990) | - | 782352..782873 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| V5F91_RS03980 (V5F91_03995) | traA | 782929..783225 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| V5F91_RS03985 (V5F91_04000) | traL | 783247..783528 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| V5F91_RS03990 (V5F91_04005) | - | 783525..784190 (+) | 666 | WP_260315229.1 | type IV conjugative transfer system protein TraE | - |
| V5F91_RS03995 (V5F91_04010) | - | 784192..784926 (+) | 735 | WP_353174454.1 | type-F conjugative transfer system secretin TraK | - |
| V5F91_RS04000 (V5F91_04015) | - | 784928..786241 (+) | 1314 | WP_353174456.1 | TrbI/VirB10 family protein | - |
| V5F91_RS04005 (V5F91_04020) | - | 786251..786970 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| V5F91_RS04010 (V5F91_04025) | - | 786967..787548 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| V5F91_RS04015 (V5F91_04030) | traC | 787558..790134 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| V5F91_RS04020 (V5F91_04035) | - | 790162..790710 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| V5F91_RS04025 (V5F91_04040) | - | 790710..791255 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| V5F91_RS04030 (V5F91_04045) | - | 791264..791920 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| V5F91_RS04035 (V5F91_04050) | - | 791917..793035 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| V5F91_RS04040 (V5F91_04055) | trbC | 793050..793802 (+) | 753 | WP_003695264.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| V5F91_RS04045 (V5F91_04060) | - | 793799..795043 (+) | 1245 | WP_003693135.1 | hypothetical protein | - |
| V5F91_RS04050 (V5F91_04065) | traN | 795067..796623 (+) | 1557 | WP_229684969.1 | conjugal transfer protein TraN | - |
| V5F91_RS04055 (V5F91_04070) | - | 796610..797035 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| V5F91_RS04060 (V5F91_04075) | - | 797047..797823 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| V5F91_RS04065 (V5F91_04080) | - | 797995..799506 (+) | 1512 | WP_003693144.1 | conjugal transfer protein TraH | - |
| V5F91_RS04070 (V5F91_04085) | - | 799513..802425 (+) | 2913 | WP_003697086.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| V5F91_RS04075 (V5F91_04090) | - | 802488..802931 (+) | 444 | WP_080282892.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63042.83 Da Isoelectric Point: 6.0083
>NTDB_id=936755 V5F91_RS03890 WP_196961867.1 762625..764370(+) (recD) [Neisseria gonorrhoeae strain WHO_S_2024]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRTHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
STVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRTHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
STVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=936755 V5F91_RS03890 WP_196961867.1 762625..764370(+) (recD) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGACGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AGCACCGTCAAAGTCCGTCAGACAGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGACGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AGCACCGTCAAAGTCCGTCAGACAGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.484 |
100 |
0.995 |