Detailed information NTG0936740

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACEPM0_RS16510
• Genome accession: NZ_CP168731
• Coordinates: 3481810..3483279 (-)
• Length: 489 a.a.
• NCBI ID: WP_028853775.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN6285
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3476810..3488279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM0_RS16500 (ACEPM0_16500)	-	3477496..3477726 (+)	231	WP_016724403.1	hypothetical protein	-
ACEPM0_RS16505 (ACEPM0_16505)	-	3478012..3481575 (+)	3564	WP_197345680.1	indolepyruvate ferredoxin oxidoreductase family protein	-
ACEPM0_RS16510 (ACEPM0_16510)	sbcB	3481810..3483279 (-)	1470	WP_028853775.1	exodeoxyribonuclease I	Machinery gene
ACEPM0_RS16515 (ACEPM0_16515)	eutC	3483306..3484118 (-)	813	WP_058908546.1	ethanolamine ammonia-lyase subunit EutC	-
ACEPM0_RS16520 (ACEPM0_16520)	-	3484127..3485521 (-)	1395	WP_405124688.1	ethanolamine ammonia-lyase subunit EutB	-
ACEPM0_RS16525 (ACEPM0_16525)	-	3485605..3487125 (-)	1521	WP_019718966.1	aldehyde dehydrogenase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55672.72 Da
• Isoelectric Point: 4.9918

>NTDB_id=936740 ACEPM0_RS16510 WP_028853775.1 3481810..3483279(-) (sbcB) [Ralstonia pseudosolanacearum strain RUN6285]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAPRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLPEGTARLPVKSIHINKSPIVIGNLK
TLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide

• Length: 1470 bp

>NTDB_id=936740 ACEPM0_RS16510 WP_028853775.1 3481810..3483279(-) (sbcB) [Ralstonia pseudosolanacearum strain RUN6285]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGACTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGCCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTAGTGTGGCCGCTGGGCTGGCATCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCGG
ACCTGCCCGAAGGCACCGCGCGCCTGCCCGTCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCATCGACTTCGCGGTCATCGAGCGTCATGCCGGTATCGCCCAAGGGGC
GCCCGATCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAGCTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTACCGCGCCCGCAATTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATTCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAATAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (19-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	47.468	96.933	0.46