Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACEPM0_RS13560 Genome accession   NZ_CP168731
Coordinates   2861113..2861556 (-) Length   147 a.a.
NCBI ID   WP_071615340.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN6285     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856113..2866556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM0_RS13545 (ACEPM0_13545) - 2857632..2859863 (-) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -
  ACEPM0_RS13550 (ACEPM0_13550) - 2860109..2860654 (-) 546 WP_011000625.1 chemotaxis protein CheW -
  ACEPM0_RS13555 (ACEPM0_13555) pilH 2860713..2861081 (-) 369 WP_003269243.1 response regulator Machinery gene
  ACEPM0_RS13560 (ACEPM0_13560) pilG 2861113..2861556 (-) 444 WP_071615340.1 response regulator Regulator
  ACEPM0_RS13565 (ACEPM0_13565) - 2861871..2862053 (-) 183 WP_003261842.1 rubredoxin -
  ACEPM0_RS13570 (ACEPM0_13570) hemL 2862265..2863566 (+) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACEPM0_RS13575 (ACEPM0_13575) dapA 2863669..2864583 (-) 915 WP_028852677.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACEPM0_RS13580 (ACEPM0_13580) - 2864964..2865590 (+) 627 WP_016723449.1 LemA family protein -
  ACEPM0_RS13585 (ACEPM0_13585) - 2865603..2866451 (+) 849 WP_028852675.1 YgcG family protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15807.37 Da        Isoelectric Point: 8.2887

>NTDB_id=936724 ACEPM0_RS13560 WP_071615340.1 2861113..2861556(-) (pilG) [Ralstonia pseudosolanacearum strain RUN6285]
MQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCDILMPKLDG
YLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 444 bp        

>NTDB_id=936724 ACEPM0_RS13560 WP_071615340.1 2861113..2861556(-) (pilG) [Ralstonia pseudosolanacearum strain RUN6285]
ATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCTTGCCGGCCGTAAAGTGCTGGTGAT
CGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATTGCCAGGTCGTGCTGGCCGAAGACG
GGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGACATCCTGATGCCCAAGCTGGACGGT
TACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGTCATGCTGTCGTCGCGCGACGGGGT
GTTCGACCGCGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTTTCTCGCGGGAAGCGCTGCTGGAGG
CGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

80.952

0.442