Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8620_RS03030 Genome accession   NZ_AP028369
Coordinates   579144..579527 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574144..584527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS03010 (B10666_05900) - 574223..576157 (-) 1935 WP_052804452.1 RNB domain-containing ribonuclease -
  R8620_RS03015 (B10666_05910) ilvC 576276..577298 (+) 1023 WP_052804453.1 ketol-acid reductoisomerase -
  R8620_RS03020 (B10666_05920) - 577302..578384 (+) 1083 WP_317650853.1 divergent polysaccharide deacetylase family protein -
  R8620_RS03025 (B10666_05930) dprA 578374..579147 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  R8620_RS03030 (B10666_05940) dprB 579144..579527 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  R8620_RS03035 (B10666_05950) - 579556..580395 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8620_RS03040 (B10666_05960) msrA 580571..581068 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8620_RS03045 (B10666_05970) ppa 581109..581627 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8620_RS03050 (B10666_05980) adk 581637..582215 (-) 579 WP_002855137.1 adenylate kinase -
  R8620_RS03055 (B10666_05990) aspS 582212..583963 (-) 1752 WP_052804469.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=93672 R8620_RS03030 WP_002856861.1 579144..579527(+) (dprB) [Campylobacter jejuni strain BCH-10666]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=93672 R8620_RS03030 WP_002856861.1 579144..579527(+) (dprB) [Campylobacter jejuni strain BCH-10666]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449