Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | V5F96_RS04325 | Genome accession | NZ_CP145059 |
| Coordinates | 836957..838702 (+) | Length | 581 a.a. |
| NCBI ID | WP_003691195.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain WHO_W_2024 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 801773..877262 | 836957..838702 | within | 0 |
| IS/Tn | 839389..840390 | 836957..838702 | flank | 687 |
Gene organization within MGE regions
Location: 801773..877262
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V5F96_RS04155 (V5F96_04165) | - | 801773..802843 (-) | 1071 | WP_003691208.1 | integrase arm-type DNA-binding domain-containing protein | - |
| V5F96_RS04160 (V5F96_04170) | - | 803052..803831 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| V5F96_RS04165 (V5F96_04175) | - | 804423..804632 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| V5F96_RS04170 (V5F96_04180) | dinB | 804731..805789 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| V5F96_RS04175 (V5F96_04185) | rep | 805859..807874 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| V5F96_RS04180 (V5F96_04190) | aroD | 807894..808658 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| V5F96_RS04185 (V5F96_04195) | recA | 808858..809904 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| V5F96_RS04190 (V5F96_04200) | - | 810557..810892 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| V5F96_RS04195 (V5F96_04205) | dnaX | 810973..813096 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| V5F96_RS04200 (V5F96_04210) | mutL | 813191..815167 (-) | 1977 | WP_003688688.1 | DNA mismatch repair endonuclease MutL | - |
| V5F96_RS04205 (V5F96_04215) | - | 815311..815496 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| V5F96_RS04210 (V5F96_04220) | - | 815507..816175 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| V5F96_RS04215 (V5F96_04225) | - | 816175..816888 (+) | 714 | WP_003688685.1 | tol-pal system YbgF family protein | - |
| V5F96_RS04220 (V5F96_04230) | purE | 816936..817421 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| V5F96_RS04225 (V5F96_04235) | - | 817633..818497 (-) | 865 | Protein_825 | transposase | - |
| V5F96_RS04230 (V5F96_04240) | - | 818814..819179 (+) | 366 | Protein_826 | transposase | - |
| V5F96_RS04235 (V5F96_04245) | - | 819201..820205 (+) | 1005 | Protein_827 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| V5F96_RS04240 (V5F96_04250) | - | 820406..821062 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| V5F96_RS04245 (V5F96_04255) | - | 821059..822828 (-) | 1770 | WP_003691205.1 | histidine kinase | - |
| V5F96_RS04250 (V5F96_04260) | - | 823035..823649 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| V5F96_RS04255 (V5F96_04265) | - | 823812..824429 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| V5F96_RS04260 (V5F96_04270) | - | 824437..825300 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| V5F96_RS04265 (V5F96_04275) | - | 825313..825747 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| V5F96_RS04270 (V5F96_04280) | rpe | 825893..826576 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| V5F96_RS04275 (V5F96_04285) | ruvB | 826821..827852 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| V5F96_RS04280 (V5F96_04290) | - | 827934..828242 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| V5F96_RS04285 (V5F96_04295) | - | 828661..829893 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| V5F96_RS04290 (V5F96_04300) | - | 829972..831600 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| V5F96_RS04295 (V5F96_04305) | - | 831750..832124 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| V5F96_RS04300 (V5F96_04310) | - | 832173..833711 (+) | 1539 | WP_003691199.1 | SurA N-terminal domain-containing protein | - |
| V5F96_RS04305 (V5F96_04315) | recR | 833778..834395 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| V5F96_RS04310 (V5F96_04320) | - | 834451..834729 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| V5F96_RS04315 (V5F96_04325) | - | 834955..836202 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| V5F96_RS04320 (V5F96_04330) | lolD | 836195..836890 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| V5F96_RS04325 (V5F96_04335) | recD | 836957..838702 (+) | 1746 | WP_003691195.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| V5F96_RS04330 (V5F96_04340) | - | 838774..839420 (-) | 647 | Protein_846 | methyltransferase | - |
| V5F96_RS04335 (V5F96_04345) | - | 839428..840390 (+) | 963 | WP_017147020.1 | IS110 family transposase | - |
| V5F96_RS04340 (V5F96_04350) | - | 840523..840978 (-) | 456 | Protein_848 | methyltransferase | - |
| V5F96_RS04345 (V5F96_04355) | lon | 841230..843692 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| V5F96_RS04350 (V5F96_04360) | - | 843874..844143 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| V5F96_RS04355 (V5F96_04365) | - | 844319..844753 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| V5F96_RS04360 (V5F96_04370) | - | 844746..846053 (-) | 1308 | WP_003695291.1 | homoserine dehydrogenase | - |
| V5F96_RS04365 (V5F96_04375) | - | 846249..846620 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| V5F96_RS04370 (V5F96_04380) | - | 846697..848619 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| V5F96_RS04375 (V5F96_04385) | - | 848606..849001 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| V5F96_RS04380 (V5F96_04390) | - | 849092..849604 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| V5F96_RS04385 (V5F96_04395) | - | 850049..850744 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| V5F96_RS04390 (V5F96_04400) | traD | 850734..852776 (-) | 2043 | WP_003693097.1 | type IV conjugative transfer system coupling protein TraD | - |
| V5F96_RS04395 (V5F96_04405) | mobH | 852773..855325 (-) | 2553 | WP_047949925.1 | MobH family relaxase | - |
| V5F96_RS04400 (V5F96_04410) | - | 855322..855741 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| V5F96_RS04405 (V5F96_04415) | - | 856252..856713 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| V5F96_RS04410 (V5F96_04420) | - | 856683..857204 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| V5F96_RS04415 (V5F96_04425) | traA | 857260..857556 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| V5F96_RS04420 (V5F96_04430) | traL | 857578..857859 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| V5F96_RS04425 (V5F96_04435) | - | 857856..858521 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| V5F96_RS04430 (V5F96_04440) | - | 858523..859257 (+) | 735 | WP_003695279.1 | type-F conjugative transfer system secretin TraK | - |
| V5F96_RS04435 (V5F96_04445) | - | 859259..860572 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| V5F96_RS04440 (V5F96_04450) | - | 860582..861301 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| V5F96_RS04445 (V5F96_04455) | - | 861298..861879 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| V5F96_RS04450 (V5F96_04460) | traC | 861889..864465 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| V5F96_RS04455 (V5F96_04465) | - | 864493..865041 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| V5F96_RS04460 (V5F96_04470) | - | 865041..865586 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| V5F96_RS04465 (V5F96_04475) | - | 865595..866251 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| V5F96_RS04470 (V5F96_04480) | - | 866248..867366 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| V5F96_RS04475 (V5F96_04485) | trbC | 867381..868133 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| V5F96_RS04480 (V5F96_04490) | - | 868130..869374 (+) | 1245 | WP_033909962.1 | hypothetical protein | - |
| V5F96_RS04485 (V5F96_04495) | traN | 869413..870954 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| V5F96_RS04490 (V5F96_04500) | - | 870941..871366 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| V5F96_RS04495 (V5F96_04505) | - | 871378..872154 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| V5F96_RS04500 (V5F96_04510) | - | 872326..873837 (+) | 1512 | WP_003693144.1 | conjugal transfer protein TraH | - |
| V5F96_RS04505 (V5F96_04515) | - | 873844..876756 (+) | 2913 | WP_047949926.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| V5F96_RS04510 (V5F96_04520) | - | 876819..877262 (+) | 444 | WP_002255587.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63097.87 Da Isoelectric Point: 5.8825
>NTDB_id=936660 V5F96_RS04325 WP_003691195.1 836957..838702(+) (recD) [Neisseria gonorrhoeae strain WHO_W_2024]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=936660 V5F96_RS04325 WP_003691195.1 836957..838702(+) (recD) [Neisseria gonorrhoeae strain WHO_W_2024]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCTATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCTATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.656 |
100 |
0.997 |