Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACEPMY_RS11765 Genome accession   NZ_CP168729
Coordinates   2490777..2491820 (+) Length   347 a.a.
NCBI ID   WP_011000966.1    Uniprot ID   Q8Y0M9
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2485777..2496820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS11745 (ACEPMY_11745) iscR 2486166..2486747 (-) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -
  ACEPMY_RS11750 (ACEPMY_11750) - 2487155..2488114 (+) 960 WP_028852852.1 sugar ABC transporter substrate-binding protein -
  ACEPMY_RS11755 (ACEPMY_11755) - 2488150..2489721 (+) 1572 WP_011000968.1 sugar ABC transporter ATP-binding protein -
  ACEPMY_RS11760 (ACEPMY_11760) - 2489711..2490757 (+) 1047 WP_020831548.1 ABC transporter permease -
  ACEPMY_RS11765 (ACEPMY_11765) cytR 2490777..2491820 (+) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  ACEPMY_RS11770 (ACEPMY_11770) rbsK 2491857..2492804 (+) 948 WP_071092995.1 ribokinase -
  ACEPMY_RS11775 (ACEPMY_11775) - 2492831..2494918 (-) 2088 WP_197345759.1 site-specific recombinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37288.37 Da        Isoelectric Point: 6.9310

>NTDB_id=936658 ACEPMY_RS11765 WP_011000966.1 2490777..2491820(+) (cytR) [Ralstonia pseudosolanacearum strain RUN6340]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=936658 ACEPMY_RS11765 WP_011000966.1 2490777..2491820(+) (cytR) [Ralstonia pseudosolanacearum strain RUN6340]
ATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCACGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGATCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGCCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAGACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACCACGGCCTCAACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36