Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACEPMY_RS09620 Genome accession   NZ_CP168729
Coordinates   2049024..2050394 (-) Length   456 a.a.
NCBI ID   WP_016722028.1    Uniprot ID   A0ABX7ZUJ9
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044024..2055394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS09600 (ACEPMY_09600) - 2044867..2046798 (+) 1932 WP_118872494.1 ATP-binding cassette domain-containing protein -
  ACEPMY_RS09605 (ACEPMY_09605) - 2046830..2047936 (+) 1107 Protein_1877 CaiB/BaiF CoA transferase family protein -
  ACEPMY_RS09610 (ACEPMY_09610) - 2047919..2048440 (-) 522 WP_011001323.1 DUF523 domain-containing protein -
  ACEPMY_RS09615 (ACEPMY_09615) - 2048451..2048930 (-) 480 WP_011001322.1 disulfide bond formation protein B -
  ACEPMY_RS09620 (ACEPMY_09620) radA/sms 2049024..2050394 (-) 1371 WP_016722028.1 DNA repair protein RadA Machinery gene
  ACEPMY_RS09625 (ACEPMY_09625) alr 2050474..2051601 (-) 1128 WP_197346138.1 alanine racemase -
  ACEPMY_RS09630 (ACEPMY_09630) lplT 2052232..2053548 (+) 1317 WP_011001319.1 lysophospholipid transporter LplT -
  ACEPMY_RS09635 (ACEPMY_09635) - 2053669..2054532 (-) 864 WP_197346139.1 uracil-DNA glycosylase family protein -
  ACEPMY_RS09640 (ACEPMY_09640) rimI 2054603..2055136 (-) 534 WP_021154817.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48397.86 Da        Isoelectric Point: 7.6668

>NTDB_id=936649 ACEPMY_RS09620 WP_016722028.1 2049024..2050394(-) (radA/sms) [Ralstonia pseudosolanacearum strain RUN6340]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVETVAQPVSGAGARFQSLAASAVVRKLADIDAVDVPRFSSGIDEFDR
VLGGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAASRRVLYVSGEESGAQIALRARRLGVESPNLALLAEIQLERIQATI
EAEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQPIDGLQVIAVERIEQAIDRVRGLEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=936649 ACEPMY_RS09620 WP_016722028.1 2049024..2050394(-) (radA/sms) [Ralstonia pseudosolanacearum strain RUN6340]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAGTGCGGCGGCACGTCGCCGAAATGGGCGGGGCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAACCGTGGCGCAGCCGGTGTCCGGCGCCGGCGCGCGCTTCCAGTCGCTGGCGGCGA
GCGCCGTGGTGCGCAAGCTGGCGGACATCGACGCCGTGGACGTGCCGCGCTTCTCCAGCGGCATCGACGAATTCGACCGC
GTGCTGGGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCT
GCAGGCGCTGTCCAACCTGGCGGCCAGCCGGCGCGTGCTGTACGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGC
GGGCGCGGCGCCTCGGCGTCGAAAGCCCGAACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGCGCATCCAGGCCACCATC
GAGGCGGAGAAGCCCGAGGTGGTCGTCATCGACTCCATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCGCTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGATACGGTGCTGTATTTCGAGGGCGAC
ACGCATTCGGCCTACCGGCTGGTACGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGAC
CGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAGGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGCGGCGGGCGTGCCGAACCCG
CGGCGGCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCATCGGCACGCGGGCATTGCCTG
CTTCGATCAGGACGTGTTCCTCAATGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGG
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTTTTCGGCGAGATCGGGCTGGCCGGCGAGATC
CGTCCGACGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCGTGATCCCCAAGTCGAA
CGCGCCCAAGCAGCCGATTGACGGCCTCCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCGATCGACCGGGTGCGCGGGC
TGGAGGCTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-448)

AAA domain (AAA_25)

(65-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.93

100

0.469
  radA Streptococcus pneumoniae D39

46.93

100

0.469
  radA Streptococcus pneumoniae R6

46.93

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.469
  radA Streptococcus mitis SK321

47.124

99.123

0.467
  radA Streptococcus mitis NCTC 12261

46.903

99.123

0.465