Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACEPMY_RS04315 Genome accession   NZ_CP168729
Coordinates   888304..888978 (-) Length   224 a.a.
NCBI ID   WP_028853526.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883304..893978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS04290 (ACEPMY_04290) nadA 883903..885051 (+) 1149 WP_011002366.1 quinolinate synthase NadA -
  ACEPMY_RS04295 (ACEPMY_04295) nadC 885048..885935 (+) 888 WP_016725921.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACEPMY_RS04300 (ACEPMY_04300) nadB 885942..887543 (-) 1602 WP_197345722.1 L-aspartate oxidase -
  ACEPMY_RS04305 (ACEPMY_04305) rpmG 887712..887882 (-) 171 WP_003262397.1 50S ribosomal protein L33 -
  ACEPMY_RS04310 (ACEPMY_04310) rpmB 887896..888129 (-) 234 WP_003262398.1 50S ribosomal protein L28 -
  ACEPMY_RS04315 (ACEPMY_04315) radC 888304..888978 (-) 675 WP_028853526.1 DNA repair protein RadC Machinery gene
  ACEPMY_RS04320 (ACEPMY_04320) - 889101..889580 (+) 480 WP_197345723.1 peptidylprolyl isomerase -
  ACEPMY_RS04325 (ACEPMY_04325) ispH 889580..890554 (+) 975 WP_011002361.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEPMY_RS04330 (ACEPMY_04330) - 891010..892218 (+) 1209 WP_058907798.1 branched-chain amino acid ABC transporter substrate-binding protein -
  ACEPMY_RS04335 (ACEPMY_04335) - 892429..893364 (+) 936 WP_011002359.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25110.11 Da        Isoelectric Point: 7.6574

>NTDB_id=936640 ACEPMY_RS04315 WP_028853526.1 888304..888978(-) (radC) [Ralstonia pseudosolanacearum strain RUN6340]
MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREFSAIHGMGPAKYA
QLHALLEVARRALKEEIAHGQPLESPQSVKDFLRLTLGHRPQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKR
ALHHNASALILSHNHPTGHVEPSESDLMLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM

Nucleotide


Download         Length: 675 bp        

>NTDB_id=936640 ACEPMY_RS04315 WP_028853526.1 888304..888978(-) (radC) [Ralstonia pseudosolanacearum strain RUN6340]
ATGGCAATCGCTGACTGGCCGGCCCACGAGCGGCCGCGTGAAAAACTGCTCACCCAAGGTCCCGCCGCGCTGTCCGACGC
GGAATTGCTGGCGATCTTCCTGCGCGTCGGCATGCCGGGCAAGAGTGCGGTCGATCTCGCCCGCGAGCTGCTGGCCCACT
TCGGCTCGCTCGGGCGCCTGTGTCATGCGTCGCGACGGGAGTTCTCCGCCATCCACGGCATGGGGCCGGCCAAGTACGCC
CAGTTGCACGCGCTGCTGGAGGTGGCGCGGCGCGCGCTCAAGGAAGAAATCGCGCACGGCCAGCCCCTCGAATCCCCGCA
GAGCGTCAAGGATTTCCTGCGGCTCACGCTCGGCCACCGCCCGCAGGAAGTGTTCGCCTGCCTGTTCCTGGACGTGCGGC
ACCGGCTCATCGCCTGGGAAGAGCTGTTCCAGGGAACGCTGACCGAAGCCCGCGTGTACCCGCGCGAGATCGCCAAGCGG
GCCCTGCACCACAACGCCTCGGCGCTGATCCTGTCGCACAACCACCCGACCGGCCATGTCGAGCCCAGCGAATCGGACCT
GATGCTCACCCGTGAACTGTGCCGGGCACTCGCGCTGCTCGACGTGAGAGTCCTGGATCACATGATCGTCGGCCGCGCCG
AGGTCTACAGCTTCCTGGAGCACGGCAAAATGTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

93.75

0.455