Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QML81_RS05665 Genome accession   NZ_AP025696
Coordinates   1063075..1064889 (-) Length   604 a.a.
NCBI ID   WP_345741163.1    Uniprot ID   -
Organism   Nitrosophilus kaiyonis strain MOT50     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058075..1069889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML81_RS05650 - 1060557..1060949 (-) 393 WP_281950445.1 hypothetical protein -
  QML81_RS05655 - 1060959..1062578 (-) 1620 WP_281950446.1 Hpt domain-containing protein -
  QML81_RS05660 - 1062575..1062988 (-) 414 WP_281950447.1 PAS domain S-box protein -
  QML81_RS05665 uvrC 1063075..1064889 (-) 1815 WP_345741163.1 excinuclease ABC subunit UvrC Machinery gene
  QML81_RS05670 - 1064889..1065308 (-) 420 WP_281950449.1 hypothetical protein -
  QML81_RS05675 nadB 1065419..1066855 (+) 1437 WP_281950450.1 L-aspartate oxidase -
  QML81_RS05680 nhaD 1066876..1068174 (+) 1299 WP_281950451.1 sodium:proton antiporter NhaD -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70452.45 Da        Isoelectric Point: 10.0937

>NTDB_id=93664 QML81_RS05665 WP_345741163.1 1063075..1064889(-) (uvrC) [Nitrosophilus kaiyonis strain MOT50]
MKLLEKLKNLPDAPGVYQYFDKNGSLLYVGKAKSLKNRVKSYFRFSPKFMPAANLSPRIYKMVHEIYDLEYILVENENDA
LILENSLIKQLKPKYNILLRDDKTYPYIYIDLSQDFPRFEITRKVVKGKKIKYYGPFSVAAKDILDSIYEIFPLVQKKSC
INGKKACLFYQMKRCLAPCEGKISKDEYKKVVEDAIKHILDKNLLIKKLESKMLDLSKNLRFEEAAIIRDRIEKIKKSNI
QSNIDFAKLEDLDVLYIHEKKNEAVIIRIFMREGKVISSSSKIIKYDIDKGFDIDEAYKRAILDFYRNDSIFISKKIIVG
KDFEQKGEIEELLRKKFKKNISIINPKKGEKVKLIKLAQINAKEILSKNQKNKNDEILYKIKELFDLKTTPFRIEIFDNS
HIKGKQPVGAMVVYENEKLKKDDYRHYNLTSKDEYSQMKELLSKRADSFEKNPPPDLWVIDGGETLRKLAKDILKSVGVD
IDVIAIAKEKADFKAVRSKGRARDIIYSEKEVFDLLPNDKRLQFIQYLRDEAHRFAIKFHKHQKIKHDKEISLLNATGIG
EAKIKKLLNYFGSFENIKSATIEEIATVLNKKDAKNIKSFLSKN

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=93664 QML81_RS05665 WP_345741163.1 1063075..1064889(-) (uvrC) [Nitrosophilus kaiyonis strain MOT50]
ATGAAACTGCTTGAAAAGTTAAAAAATCTTCCAGATGCTCCAGGGGTTTACCAATATTTTGATAAAAATGGATCACTTTT
ATATGTTGGGAAAGCAAAAAGTTTAAAAAATAGAGTAAAAAGTTATTTTAGATTTTCACCAAAATTTATGCCTGCGGCAA
ATTTAAGTCCAAGAATATATAAAATGGTTCATGAAATATATGATTTAGAATACATTTTGGTAGAAAATGAAAATGACGCC
CTTATTTTAGAAAACTCTCTAATAAAGCAGCTCAAGCCAAAATATAATATCTTATTAAGAGATGATAAAACCTATCCATA
CATATATATAGATTTATCACAAGATTTTCCAAGATTTGAAATAACAAGAAAGGTTGTAAAAGGGAAAAAGATAAAATATT
ATGGACCATTTTCAGTAGCTGCAAAAGATATACTTGACTCTATTTATGAAATATTTCCGCTTGTTCAAAAAAAGAGCTGT
ATAAATGGTAAAAAAGCATGTCTCTTTTATCAAATGAAAAGATGTCTTGCACCTTGTGAAGGGAAAATATCAAAAGATGA
ATATAAAAAAGTAGTAGAAGATGCAATAAAACATATTTTAGACAAAAATCTTCTTATAAAAAAACTTGAATCAAAAATGC
TTGATTTATCGAAAAATCTAAGATTTGAAGAAGCAGCAATCATTAGAGATAGAATAGAAAAAATTAAAAAAAGCAATATA
CAAAGTAACATAGATTTTGCAAAACTTGAAGATTTGGATGTTTTATATATCCATGAGAAAAAAAATGAAGCCGTTATTAT
TAGAATCTTTATGAGAGAGGGAAAGGTGATCTCAAGTAGCTCTAAAATTATAAAATATGATATTGATAAAGGATTTGATA
TTGATGAAGCTTACAAAAGAGCTATTTTAGATTTTTATAGAAATGACTCAATCTTTATATCAAAAAAGATTATAGTAGGG
AAAGATTTTGAGCAAAAAGGAGAGATTGAAGAGCTTTTAAGAAAAAAGTTTAAAAAAAATATTTCAATTATCAATCCAAA
AAAAGGAGAAAAGGTAAAGCTTATAAAACTTGCTCAAATAAATGCCAAAGAGATTTTAAGCAAAAATCAAAAAAATAAAA
ATGATGAAATTTTATATAAAATTAAAGAGCTTTTTGATTTAAAAACAACTCCTTTTAGAATAGAGATTTTTGATAATTCA
CATATAAAAGGAAAACAGCCAGTTGGAGCTATGGTAGTTTATGAAAATGAAAAATTAAAAAAAGATGATTATAGACATTA
CAATCTAACATCAAAAGATGAATATTCACAAATGAAAGAGCTTTTATCAAAAAGAGCAGATAGTTTTGAAAAAAATCCTC
CTCCTGATTTATGGGTAATAGATGGAGGGGAGACTCTTAGAAAACTTGCAAAAGATATTTTGAAAAGTGTAGGTGTTGAT
ATAGATGTCATAGCAATAGCAAAAGAAAAGGCTGATTTTAAAGCTGTAAGAAGTAAAGGAAGAGCCAGAGATATCATCTA
TAGTGAAAAAGAAGTCTTTGATCTTTTACCAAATGACAAAAGATTGCAATTTATCCAATATCTTCGTGATGAGGCTCACA
GATTTGCTATAAAATTCCACAAACATCAAAAGATTAAACATGATAAAGAGATCTCTTTATTAAATGCAACTGGTATAGGT
GAGGCAAAAATTAAAAAACTTCTTAATTATTTTGGCTCTTTTGAAAATATAAAAAGTGCTACTATTGAAGAAATTGCTAC
TGTTTTAAATAAAAAAGATGCTAAAAATATAAAAAGTTTTTTATCTAAGAATTAG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-537)

UvrB/uvrC motif (UVR)

(205-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

54.392

98.013

0.533

Multiple sequence alignment