Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACEPMY_RS03965 Genome accession   NZ_CP168729
Coordinates   815691..816311 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810691..821311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS03935 (ACEPMY_03935) - 811193..811951 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  ACEPMY_RS03940 (ACEPMY_03940) adk 812110..812778 (-) 669 WP_011002448.1 adenylate kinase -
  ACEPMY_RS03945 (ACEPMY_03945) kdsB 813098..813904 (-) 807 WP_011002447.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACEPMY_RS03950 (ACEPMY_03950) - 813923..814111 (-) 189 WP_003266270.1 Trm112 family protein -
  ACEPMY_RS03955 (ACEPMY_03955) lpxK 814172..815221 (-) 1050 WP_028853554.1 tetraacyldisaccharide 4'-kinase -
  ACEPMY_RS03960 (ACEPMY_03960) - 815237..815668 (-) 432 WP_011002445.1 biopolymer transporter ExbD -
  ACEPMY_RS03965 (ACEPMY_03965) exbB 815691..816311 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACEPMY_RS03970 (ACEPMY_03970) xseA 817936..819351 (+) 1416 WP_197347056.1 exodeoxyribonuclease VII large subunit -
  ACEPMY_RS03975 (ACEPMY_03975) sodB 819497..820075 (+) 579 WP_028853552.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=936637 ACEPMY_RS03965 WP_011002444.1 815691..816311(-) (exbB) [Ralstonia pseudosolanacearum strain RUN6340]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=936637 ACEPMY_RS03965 WP_011002444.1 815691..816311(-) (exbB) [Ralstonia pseudosolanacearum strain RUN6340]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCAGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGTCAGAACGTCGCCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403