Detailed information NTG0936614

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACEPM3_RS16770
• Genome accession: NZ_CP168727
• Coordinates: 3496438..3497907 (-)
• Length: 489 a.a.
• NCBI ID: WP_081272569.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN6499
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3491438..3502907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM3_RS16755 (ACEPM3_16755)	-	3491610..3495173 (+)	3564	WP_247416473.1	indolepyruvate ferredoxin oxidoreductase family protein	-
ACEPM3_RS16760 (ACEPM3_16760)	-	3495426..3495845 (-)	420	WP_021154961.1	type VI secretion system amidase immunity protein Tai4	-
ACEPM3_RS16765 (ACEPM3_16765)	-	3495842..3496336 (-)	495	WP_064478143.1	type VI secretion system amidase effector protein Tae4	-
ACEPM3_RS16770 (ACEPM3_16770)	sbcB	3496438..3497907 (-)	1470	WP_081272569.1	exodeoxyribonuclease I	Machinery gene
ACEPM3_RS16775 (ACEPM3_16775)	eutC	3497934..3498746 (-)	813	WP_028861097.1	ethanolamine ammonia-lyase subunit EutC	-
ACEPM3_RS16780 (ACEPM3_16780)	-	3498755..3500149 (-)	1395	WP_064478145.1	ethanolamine ammonia-lyase subunit EutB	-
ACEPM3_RS16785 (ACEPM3_16785)	-	3500233..3501753 (-)	1521	WP_016724410.1	aldehyde dehydrogenase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55696.71 Da
• Isoelectric Point: 4.9918

>NTDB_id=936614 ACEPM3_RS16770 WP_081272569.1 3496438..3497907(-) (sbcB) [Ralstonia pseudosolanacearum strain RUN6499]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAPRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGVDFAAIERHAGIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide

• Length: 1470 bp

>NTDB_id=936614 ACEPM3_RS16770 WP_081272569.1 3496438..3497907(-) (sbcB) [Ralstonia pseudosolanacearum strain RUN6499]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGATTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGCCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTGGTGTGGCCGCTGGGCTGGCATCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCTTGCCCATCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCGTCGATTTCGCGGCCATCGAGCGTCACGCCGGTATCGCCCAAGGCGC
ACCCGACATGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAACTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTATCGCGCGCGCAATTTTCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATCCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAGTAG

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (19-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	47.046	96.933	0.456