Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   V5F97_RS00505 Genome accession   NZ_CP145057
Coordinates   108618..109217 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103618..114217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS00490 (V5F97_00495) pilQ 105193..107388 (-) 2196 WP_353114528.1 type IV pilus secretin PilQ Machinery gene
  V5F97_RS00495 (V5F97_00500) pilP 107407..107952 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  V5F97_RS00500 (V5F97_00505) - 107970..108617 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  V5F97_RS00505 (V5F97_00510) pilN 108618..109217 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  V5F97_RS00510 (V5F97_00515) pilM 109220..110335 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  V5F97_RS00515 (V5F97_00520) - 110487..112883 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  V5F97_RS00520 (V5F97_00525) yihA 113004..113633 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=936589 V5F97_RS00505 WP_003700890.1 108618..109217(-) (pilN) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=936589 V5F97_RS00505 WP_003700890.1 108618..109217(-) (pilN) [Neisseria gonorrhoeae strain WHO_alpha_2024]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97