Detailed information NTG0936585

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEPM3_RS06420
• Genome accession: NZ_CP168727
• Coordinates: 1327184..1328317 (+)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain RUN6499
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1322184..1333317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM3_RS06395 (ACEPM3_06395)	-	1322260..1323366 (+)	1107	WP_019718025.1	alkene reductase	-
ACEPM3_RS06400 (ACEPM3_06400)	-	1323444..1324418 (-)	975	WP_011001153.1	NADPH:quinone oxidoreductase family protein	-
ACEPM3_RS06405 (ACEPM3_06405)	surE	1324610..1325365 (+)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
ACEPM3_RS06410 (ACEPM3_06410)	-	1325381..1326346 (+)	966	WP_011001155.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEPM3_RS06415 (ACEPM3_06415)	-	1326348..1327175 (+)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEPM3_RS06420 (ACEPM3_06420)	rpoS	1327184..1328317 (+)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ACEPM3_RS06425 (ACEPM3_06425)	-	1328351..1329220 (-)	870	WP_011001158.1	endonuclease/exonuclease/phosphatase family protein	-
ACEPM3_RS06430 (ACEPM3_06430)	rlmD	1329375..1330727 (+)	1353	WP_011001159.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACEPM3_RS06435 (ACEPM3_06435)	-	1330812..1331513 (-)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
ACEPM3_RS06440 (ACEPM3_06440)	ndk	1331882..1332307 (+)	426	WP_011001161.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=936585 ACEPM3_RS06420 WP_011001157.1 1327184..1328317(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN6499]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=936585 ACEPM3_RS06420 WP_011001157.1 1327184..1328317(+) (rpoS) [Ralstonia pseudosolanacearum strain RUN6499]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAGGCTGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCACGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGAATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGATCTGGATCCGGGCACTAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTATCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374