Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACEPWM_RS05845 Genome accession   NZ_CP168642
Coordinates   1233550..1234701 (+) Length   383 a.a.
NCBI ID   WP_000020367.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1228550..1239701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPWM_RS05820 (ACEPWM_05820) yfmH 1228843..1230129 (+) 1287 WP_000664781.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPWM_RS05825 (ACEPWM_05825) ymfI 1230129..1230833 (+) 705 WP_000646223.1 elongation factor P 5-aminopentanone reductase -
  ACEPWM_RS05830 (ACEPWM_05830) - 1230938..1231765 (+) 828 WP_000214892.1 YmfK family protein -
  ACEPWM_RS05835 (ACEPWM_05835) - 1231784..1232176 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ACEPWM_RS05840 (ACEPWM_05840) pgsA 1232210..1232788 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPWM_RS05845 (ACEPWM_05845) cinA 1233550..1234701 (+) 1152 WP_000020367.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACEPWM_RS05850 (ACEPWM_05850) recA 1234866..1235909 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ACEPWM_RS05855 (ACEPWM_05855) rny 1236263..1237822 (+) 1560 WP_235103074.1 ribonuclease Y -
  ACEPWM_RS05860 (ACEPWM_05860) - 1238119..1238334 (-) 216 WP_000026308.1 hypothetical protein -
  ACEPWM_RS05865 (ACEPWM_05865) - 1238508..1239305 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43255.58 Da        Isoelectric Point: 6.0928

>NTDB_id=936356 ACEPWM_RS05845 WP_000020367.1 1233550..1234701(+) (cinA) [Staphylococcus aureus strain NCCP11854]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVSKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVPSAIILLEYDGVVYIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=936356 ACEPWM_RS05845 WP_000020367.1 1233550..1234701(+) (cinA) [Staphylococcus aureus strain NCCP11854]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGATTAGGTCCTACGAAAGATGATTTAACGAAGCATACA
GTGGCCCAGATTGTTAGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGCCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCTATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431