Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACEPWM_RS03565 Genome accession   NZ_CP168642
Coordinates   758445..759527 (+) Length   360 a.a.
NCBI ID   WP_235103089.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753445..764527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPWM_RS03545 (ACEPWM_03545) - 753815..754885 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  ACEPWM_RS03550 (ACEPWM_03550) - 755203..756258 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACEPWM_RS03555 (ACEPWM_03555) - 756430..757071 (-) 642 WP_000192947.1 YigZ family protein -
  ACEPWM_RS03560 (ACEPWM_03560) fakB1 757215..758081 (+) 867 WP_235103090.1 fatty acid kinase binding subunit FakB1 -
  ACEPWM_RS03565 (ACEPWM_03565) comFA 758445..759527 (+) 1083 WP_235103089.1 DEAD/DEAH box helicase Machinery gene
  ACEPWM_RS03570 (ACEPWM_03570) - 759520..760194 (+) 675 WP_001057968.1 ComF family protein -
  ACEPWM_RS03575 (ACEPWM_03575) hpf 760255..760827 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACEPWM_RS03580 (ACEPWM_03580) secA 761241..763772 (+) 2532 WP_000506541.1 preprotein translocase subunit SecA -
  ACEPWM_RS03585 (ACEPWM_03585) - 763814..763912 (+) 99 WP_031844945.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42085.69 Da        Isoelectric Point: 9.8309

>NTDB_id=936334 ACEPWM_RS03565 WP_235103089.1 758445..759527(+) (comFA) [Staphylococcus aureus strain NCCP11854]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTMTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=936334 ACEPWM_RS03565 WP_235103089.1 758445..759527(+) (comFA) [Staphylococcus aureus strain NCCP11854]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTATGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364