Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   ACEPOT_RS12485 Genome accession   NZ_CP168499
Coordinates   2550167..2550877 (+) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545167..2555877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOT_RS12420 (ACEPOT_12420) ssb 2545217..2545645 (-) 429 WP_065317076.1 single-stranded DNA-binding protein -
  ACEPOT_RS12425 (ACEPOT_12425) - 2545645..2546283 (-) 639 WP_001043063.1 ERF family protein -
  ACEPOT_RS12430 (ACEPOT_12430) - 2546283..2546762 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  ACEPOT_RS12435 (ACEPOT_12435) - 2546777..2547037 (-) 261 WP_000291093.1 DUF1108 family protein -
  ACEPOT_RS12440 (ACEPOT_12440) - 2547130..2547291 (-) 162 WP_000048119.1 DUF1270 family protein -
  ACEPOT_RS12445 (ACEPOT_12445) - 2547284..2547505 (-) 222 WP_000594788.1 hypothetical protein -
  ACEPOT_RS12450 (ACEPOT_12450) - 2547576..2547788 (+) 213 WP_000461464.1 hypothetical protein -
  ACEPOT_RS12455 (ACEPOT_12455) - 2547803..2547880 (-) 78 Protein_2413 hypothetical protein -
  ACEPOT_RS12460 (ACEPOT_12460) - 2547896..2548648 (-) 753 WP_065317075.1 phage antirepressor KilAC domain-containing protein -
  ACEPOT_RS12465 (ACEPOT_12465) - 2548704..2549069 (+) 366 WP_001128434.1 hypothetical protein -
  ACEPOT_RS12470 (ACEPOT_12470) - 2549050..2549283 (-) 234 WP_065317074.1 DUF2829 domain-containing protein -
  ACEPOT_RS12475 (ACEPOT_12475) - 2549298..2549744 (-) 447 WP_061393900.1 hypothetical protein -
  ACEPOT_RS12480 (ACEPOT_12480) - 2549765..2549995 (-) 231 WP_238839860.1 helix-turn-helix transcriptional regulator -
  ACEPOT_RS12485 (ACEPOT_12485) irvR 2550167..2550877 (+) 711 WP_000094091.1 XRE family transcriptional regulator Regulator
  ACEPOT_RS12490 (ACEPOT_12490) - 2550889..2551035 (+) 147 WP_001049401.1 hypothetical protein -
  ACEPOT_RS12495 (ACEPOT_12495) - 2551032..2551217 (+) 186 WP_000100503.1 hypothetical protein -
  ACEPOT_RS12500 (ACEPOT_12500) - 2551253..2552236 (+) 984 WP_000439124.1 DUF3644 domain-containing protein -
  ACEPOT_RS12505 (ACEPOT_12505) - 2552415..2553461 (+) 1047 WP_065317073.1 tyrosine-type recombinase/integrase -
  ACEPOT_RS12510 (ACEPOT_12510) yfkAB 2553506..2554636 (+) 1131 WP_373381092.1 radical SAM/CxCxxxxC motif protein YfkAB -
  ACEPOT_RS12515 (ACEPOT_12515) - 2554911..2555441 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=936310 ACEPOT_RS12485 WP_000094091.1 2550167..2550877(+) (irvR) [Staphylococcus aureus strain J2]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=936310 ACEPOT_RS12485 WP_000094091.1 2550167..2550877(+) (irvR) [Staphylococcus aureus strain J2]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373