Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACEPOT_RS10180 Genome accession   NZ_CP168499
Coordinates   2133558..2135237 (-) Length   559 a.a.
NCBI ID   WP_065317091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2128558..2140237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOT_RS10160 (ACEPOT_10160) - 2128708..2129982 (-) 1275 WP_065317092.1 dihydrolipoamide acetyltransferase family protein -
  ACEPOT_RS10165 (ACEPOT_10165) - 2129995..2130978 (-) 984 WP_001096633.1 alpha-ketoacid dehydrogenase subunit beta -
  ACEPOT_RS10170 (ACEPOT_10170) - 2130978..2131970 (-) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  ACEPOT_RS10175 (ACEPOT_10175) lpdA 2131986..2133407 (-) 1422 WP_001291535.1 dihydrolipoyl dehydrogenase -
  ACEPOT_RS10180 (ACEPOT_10180) recN 2133558..2135237 (-) 1680 WP_065317091.1 DNA repair protein RecN Machinery gene
  ACEPOT_RS10185 (ACEPOT_10185) ahrC 2135253..2135705 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  ACEPOT_RS10190 (ACEPOT_10190) - 2136137..2137018 (-) 882 WP_000183375.1 polyprenyl synthetase family protein -
  ACEPOT_RS10195 (ACEPOT_10195) - 2136996..2137226 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  ACEPOT_RS10200 (ACEPOT_10200) xseA 2137219..2138556 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  ACEPOT_RS10205 (ACEPOT_10205) nusB 2138573..2138962 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  ACEPOT_RS10210 (ACEPOT_10210) - 2139022..2139384 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64309.90 Da        Isoelectric Point: 4.7316

>NTDB_id=936285 ACEPOT_RS10180 WP_065317091.1 2133558..2135237(-) (recN) [Staphylococcus aureus strain J2]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTITLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=936285 ACEPOT_RS10180 WP_065317091.1 2133558..2135237(-) (recN) [Staphylococcus aureus strain J2]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAATTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCTGAATATATACAAGTTATTTGTATCTCTCACTTACCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.058

100

0.438