Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   V5G19_RS00495 Genome accession   NZ_CP145028
Coordinates   107368..107967 (-) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_R_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102368..112967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G19_RS00480 (V5G19_00485) pilQ 103943..106138 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  V5G19_RS00485 (V5G19_00490) pilP 106157..106702 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  V5G19_RS00490 (V5G19_00495) - 106720..107367 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  V5G19_RS00495 (V5G19_00500) pilN 107368..107967 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  V5G19_RS00500 (V5G19_00505) pilM 107970..109085 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  V5G19_RS00505 (V5G19_00510) - 109237..111633 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  V5G19_RS00510 (V5G19_00515) yihA 111754..112383 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=936104 V5G19_RS00495 WP_047926976.1 107368..107967(-) (pilN) [Neisseria gonorrhoeae strain WHO_R_2024]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=936104 V5G19_RS00495 WP_047926976.1 107368..107967(-) (pilN) [Neisseria gonorrhoeae strain WHO_R_2024]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975