Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACEPOS_RS02595 Genome accession   NZ_CP168497
Coordinates   531023..532105 (-) Length   360 a.a.
NCBI ID   WP_020977076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526023..537105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOS_RS02575 (ACEPOS_02575) - 526638..526736 (-) 99 WP_271019178.1 hypothetical protein -
  ACEPOS_RS02580 (ACEPOS_02580) secA 526778..529309 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACEPOS_RS02585 (ACEPOS_02585) hpf 529723..530295 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACEPOS_RS02590 (ACEPOS_02590) - 530356..531030 (-) 675 WP_001057968.1 ComF family protein -
  ACEPOS_RS02595 (ACEPOS_02595) comFA 531023..532105 (-) 1083 WP_020977076.1 DEAD/DEAH box helicase Machinery gene
  ACEPOS_RS02600 (ACEPOS_02600) fakB1 532469..533335 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  ACEPOS_RS02605 (ACEPOS_02605) - 533479..534120 (+) 642 WP_000192947.1 YigZ family protein -
  ACEPOS_RS02610 (ACEPOS_02610) - 534292..535347 (-) 1056 WP_271019177.1 glycosyltransferase family 4 protein -
  ACEPOS_RS02615 (ACEPOS_02615) - 535665..536735 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42033.55 Da        Isoelectric Point: 9.7563

>NTDB_id=936080 ACEPOS_RS02595 WP_020977076.1 531023..532105(-) (comFA) [Staphylococcus aureus strain J23]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=936080 ACEPOS_RS02595 WP_020977076.1 531023..532105(-) (comFA) [Staphylococcus aureus strain J23]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACGGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
AATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367