Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   V5G02_RS00485 Genome accession   NZ_CP145026
Coordinates   106768..107313 (-) Length   181 a.a.
NCBI ID   WP_047919937.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101768..112313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS00475 (V5G02_00480) - 102773..103285 (-) 513 WP_003687349.1 shikimate kinase -
  V5G02_RS00480 (V5G02_00485) pilQ 104554..106749 (-) 2196 WP_050154580.1 type IV pilus secretin PilQ Machinery gene
  V5G02_RS00485 (V5G02_00490) pilP 106768..107313 (-) 546 WP_047919937.1 pilus assembly protein PilP Machinery gene
  V5G02_RS00490 (V5G02_00495) - 107331..107978 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  V5G02_RS00495 (V5G02_00500) pilN 107979..108578 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  V5G02_RS00500 (V5G02_00505) pilM 108581..109696 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  V5G02_RS00505 (V5G02_00510) - 109848..112244 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20095.65 Da        Isoelectric Point: 4.7529

>NTDB_id=936054 V5G02_RS00485 WP_047919937.1 106768..107313(-) (pilP) [Neisseria gonorrhoeae strain WHO_S2_2024]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPVAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=936054 V5G02_RS00485 WP_047919937.1 106768..107313(-) (pilP) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGTCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978