Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8954_RS06440 Genome accession   NZ_AP028365
Coordinates   1209162..1209656 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain BCH-10632     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204162..1214656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8954_RS06425 (B10632_12630) - 1205548..1206726 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  R8954_RS06430 (B10632_12640) gpsA 1206745..1207632 (-) 888 WP_079769452.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8954_RS06435 (B10632_12650) gatB 1207629..1209047 (-) 1419 WP_317726000.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8954_RS06440 (B10632_12660) luxS 1209162..1209656 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  R8954_RS06445 (B10632_12670) - 1209968..1210948 (+) 981 WP_201457822.1 isopenicillin N synthase family dioxygenase -
  R8954_RS06450 (B10632_12680) - 1210959..1211729 (+) 771 WP_317726003.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8954_RS06455 (B10632_12690) metE 1211741..1214005 (+) 2265 WP_100623887.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=93594 R8954_RS06440 WP_002857890.1 1209162..1209656(+) (luxS) [Campylobacter jejuni strain BCH-10632]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93594 R8954_RS06440 WP_002857890.1 1209162..1209656(+) (luxS) [Campylobacter jejuni strain BCH-10632]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment