Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   V5G05_RS02690 Genome accession   NZ_CP145019
Coordinates   518735..519676 (+) Length   313 a.a.
NCBI ID   WP_003690899.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_X_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513735..524676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G05_RS02665 (V5G05_02670) - 514233..514742 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G05_RS02670 (V5G05_02675) - 514974..515555 (-) 582 WP_003690895.1 superoxide dismutase -
  V5G05_RS02675 (V5G05_02680) dnaB 515719..517125 (+) 1407 WP_003690896.1 replicative DNA helicase -
  V5G05_RS02680 (V5G05_02685) pilH 517433..518098 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G05_RS02685 (V5G05_02690) pilI 518130..518738 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  V5G05_RS02690 (V5G05_02695) pilJ 518735..519676 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  V5G05_RS02695 (V5G05_02700) pilK 519655..520263 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G05_RS02700 (V5G05_02705) pilL 520265..520738 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  V5G05_RS02705 (V5G05_02710) - 521350..521795 (-) 446 Protein_522 AzlC family ABC transporter permease -
  V5G05_RS02710 (V5G05_02715) dut 521961..522413 (+) 453 WP_003690909.1 dUTP diphosphatase -
  V5G05_RS02715 (V5G05_02720) dapC 522491..523678 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  V5G05_RS02720 (V5G05_02725) yaaA 523834..524613 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34444.17 Da        Isoelectric Point: 8.9718

>NTDB_id=935924 V5G05_RS02690 WP_003690899.1 518735..519676(+) (pilJ) [Neisseria gonorrhoeae strain WHO_X_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLNLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAI
SKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRY
IYVSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=935924 V5G05_RS02690 WP_003690899.1 518735..519676(+) (pilJ) [Neisseria gonorrhoeae strain WHO_X_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTA
ACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATA
TCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

88.924

100

0.898