Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACEPO3_RS06275 Genome accession   NZ_CP168440
Coordinates   1284016..1285167 (+) Length   383 a.a.
NCBI ID   WP_000020347.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P3L28A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1279016..1290167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPO3_RS06250 (ACEPO3_06250) yfmH 1279847..1281133 (+) 1287 WP_000664775.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPO3_RS06255 (ACEPO3_06255) ymfI 1281133..1281837 (+) 705 WP_000646228.1 elongation factor P 5-aminopentanone reductase -
  ACEPO3_RS06260 (ACEPO3_06260) - 1281942..1282769 (+) 828 WP_000214890.1 YmfK family protein -
  ACEPO3_RS06265 (ACEPO3_06265) - 1282788..1283180 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ACEPO3_RS06270 (ACEPO3_06270) pgsA 1283214..1283792 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPO3_RS06275 (ACEPO3_06275) cinA 1284016..1285167 (+) 1152 WP_000020347.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACEPO3_RS06280 (ACEPO3_06280) recA 1285332..1286375 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ACEPO3_RS06285 (ACEPO3_06285) rny 1286729..1288288 (+) 1560 WP_001050913.1 ribonuclease Y -
  ACEPO3_RS06290 (ACEPO3_06290) - 1288585..1288800 (-) 216 WP_000026308.1 hypothetical protein -
  ACEPO3_RS06295 (ACEPO3_06295) - 1288974..1289771 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43265.58 Da        Isoelectric Point: 6.1914

>NTDB_id=935914 ACEPO3_RS06275 WP_000020347.1 1284016..1285167(+) (cinA) [Staphylococcus aureus strain P3L28A]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=935914 ACEPO3_RS06275 WP_000020347.1 1284016..1285167(+) (cinA) [Staphylococcus aureus strain P3L28A]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433