Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACD268_RS05415 Genome accession   NZ_CP168299
Coordinates   1042198..1043268 (-) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain FC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037198..1048268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS05400 (ACD268_05400) - 1038280..1039323 (+) 1044 WP_050100307.1 dihydrolipoamide acetyltransferase -
  ACD268_RS05405 (ACD268_05405) lpdA 1039369..1041072 (+) 1704 WP_050100309.1 dihydrolipoyl dehydrogenase -
  ACD268_RS05410 (ACD268_05410) - 1041136..1042125 (+) 990 WP_000873987.1 lipoate--protein ligase -
  ACD268_RS05415 (ACD268_05415) xerS 1042198..1043268 (-) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  ACD268_RS05420 (ACD268_05420) - 1043822..1045378 (-) 1557 WP_050273808.1 ClC family H(+)/Cl(-) exchange transporter -
  ACD268_RS05425 (ACD268_05425) - 1045394..1046173 (-) 780 WP_330789255.1 ribonuclease HII -
  ACD268_RS05430 (ACD268_05430) ylqF 1046160..1047011 (-) 852 WP_330789256.1 ribosome biogenesis GTPase YlqF -
  ACD268_RS05435 (ACD268_05435) - 1047093..1047285 (+) 193 Protein_1075 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=935425 ACD268_RS05415 WP_000817884.1 1042198..1043268(-) (xerS) [Streptococcus pneumoniae strain FC1]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=935425 ACD268_RS05415 WP_000817884.1 1042198..1043268(-) (xerS) [Streptococcus pneumoniae strain FC1]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997