Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V5G23_RS22230 Genome accession   NZ_CP144925
Coordinates   4250028..4250315 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain CP13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4245028..4255315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS22215 (V5G23_22215) ade 4245947..4247668 (-) 1722 WP_075218311.1 adenine deaminase -
  V5G23_RS22220 (V5G23_22220) - 4247796..4248458 (-) 663 WP_003181388.1 TrkA family potassium uptake protein -
  V5G23_RS22225 (V5G23_22225) - 4248523..4249860 (-) 1338 WP_011197947.1 ATP-binding protein -
  V5G23_RS22230 (V5G23_22230) abrB 4250028..4250315 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V5G23_RS22235 (V5G23_22235) mreBH 4250622..4251629 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  V5G23_RS22240 (V5G23_22240) - 4251703..4251834 (+) 132 WP_003181378.1 protein YkpC -
  V5G23_RS22245 (V5G23_22245) - 4251925..4253157 (+) 1233 WP_003181374.1 aminopeptidase -
  V5G23_RS22250 (V5G23_22250) - 4253295..4253669 (-) 375 WP_003181373.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=935389 V5G23_RS22230 WP_003181383.1 4250028..4250315(-) (abrB) [Bacillus licheniformis strain CP13]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=935389 V5G23_RS22230 WP_003181383.1 4250028..4250315(-) (abrB) [Bacillus licheniformis strain CP13]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537