Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V5G23_RS16655 Genome accession   NZ_CP144925
Coordinates   3224281..3225081 (+) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219281..3230081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS16635 (V5G23_16635) - 3219303..3220148 (+) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  V5G23_RS16640 (V5G23_16640) argR 3220314..3220763 (+) 450 WP_003183369.1 transcriptional regulator ArgR -
  V5G23_RS16645 (V5G23_16645) recN 3220795..3222525 (+) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  V5G23_RS16650 (V5G23_16650) spoIVB 3222675..3223991 (+) 1317 WP_338433614.1 SpoIVB peptidase -
  V5G23_RS16655 (V5G23_16655) spo0A 3224281..3225081 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  V5G23_RS16660 (V5G23_16660) - 3225454..3225750 (+) 297 WP_003183359.1 antimicrobial peptide LCI -
  V5G23_RS16665 (V5G23_16665) - 3225881..3226264 (+) 384 WP_003183357.1 serine acetyltransferase -
  V5G23_RS16670 (V5G23_16670) - 3226595..3228025 (+) 1431 WP_016886315.1 IS1182 family transposase -
  V5G23_RS16675 (V5G23_16675) - 3228299..3228619 (+) 321 WP_003183355.1 hypothetical protein -
  V5G23_RS16680 (V5G23_16680) - 3228700..3229275 (+) 576 WP_202604333.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=935379 V5G23_RS16655 WP_003183361.1 3224281..3225081(+) (spo0A) [Bacillus licheniformis strain CP13]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=935379 V5G23_RS16655 WP_003183361.1 3224281..3225081(+) (spo0A) [Bacillus licheniformis strain CP13]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925