Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V5G23_RS16050 Genome accession   NZ_CP144925
Coordinates   3120042..3120812 (+) Length   256 a.a.
NCBI ID   WP_003183624.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3115042..3125812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS16020 (V5G23_16020) - 3115386..3117440 (+) 2055 WP_225315881.1 HD family phosphohydrolase -
  V5G23_RS16025 (V5G23_16025) ybeY 3117437..3117913 (+) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  V5G23_RS16030 (V5G23_16030) - 3117891..3118271 (+) 381 WP_003183633.1 diacylglycerol kinase family protein -
  V5G23_RS16035 (V5G23_16035) - 3118403..3118813 (+) 411 WP_017474320.1 cytidine deaminase -
  V5G23_RS16040 (V5G23_16040) era 3118794..3119699 (+) 906 WP_009327871.1 GTPase Era -
  V5G23_RS16045 (V5G23_16045) - 3119861..3120004 (+) 144 WP_003183626.1 YqzL family protein -
  V5G23_RS16050 (V5G23_16050) recO 3120042..3120812 (+) 771 WP_003183624.1 DNA repair protein RecO Machinery gene
  V5G23_RS16055 (V5G23_16055) glyQ 3121145..3122032 (+) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  V5G23_RS16060 (V5G23_16060) glyS 3122025..3124064 (+) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  V5G23_RS16065 (V5G23_16065) - 3124262..3124900 (+) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  V5G23_RS16070 (V5G23_16070) - 3124926..3125738 (+) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29473.12 Da        Isoelectric Point: 8.5644

>NTDB_id=935372 V5G23_RS16050 WP_003183624.1 3120042..3120812(+) (recO) [Bacillus licheniformis strain CP13]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=935372 V5G23_RS16050 WP_003183624.1 3120042..3120812(+) (recO) [Bacillus licheniformis strain CP13]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781