Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V5G23_RS15880 Genome accession   NZ_CP144925
Coordinates   3087591..3088220 (+) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain CP13     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3082591..3093220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS15845 (V5G23_15845) aroE 3083233..3084069 (+) 837 WP_003183706.1 shikimate dehydrogenase -
  V5G23_RS15850 (V5G23_15850) yhbY 3084063..3084353 (+) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  V5G23_RS15855 (V5G23_15855) - 3084372..3084941 (+) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  V5G23_RS15860 (V5G23_15860) yqeK 3084931..3085494 (+) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  V5G23_RS15865 (V5G23_15865) rsfS 3085508..3085864 (+) 357 WP_003183699.1 ribosome silencing factor -
  V5G23_RS15870 (V5G23_15870) - 3085861..3086616 (+) 756 WP_011198132.1 class I SAM-dependent methyltransferase -
  V5G23_RS15875 (V5G23_15875) comER 3086686..3087507 (-) 822 WP_009327864.1 late competence protein ComER -
  V5G23_RS15880 (V5G23_15880) comEA 3087591..3088220 (+) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5G23_RS15885 (V5G23_15885) - 3088289..3088858 (+) 570 WP_003183690.1 ComE operon protein 2 -
  V5G23_RS15890 (V5G23_15890) - 3088862..3091249 (+) 2388 WP_075218365.1 DNA internalization-related competence protein ComEC/Rec2 -
  V5G23_RS15895 (V5G23_15895) - 3091274..3091405 (-) 132 WP_003183686.1 YqzM family protein -
  V5G23_RS15900 (V5G23_15900) holA 3091635..3092678 (+) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  V5G23_RS15905 (V5G23_15905) rpsT 3092740..3093006 (-) 267 WP_003183682.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=935370 V5G23_RS15880 WP_003183693.1 3087591..3088220(+) (comEA) [Bacillus licheniformis strain CP13]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=935370 V5G23_RS15880 WP_003183693.1 3087591..3088220(+) (comEA) [Bacillus licheniformis strain CP13]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526