Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V5G23_RS07650 Genome accession   NZ_CP144925
Coordinates   1496727..1497239 (+) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus licheniformis strain CP13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1491727..1502239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS07620 (V5G23_07620) - 1491887..1492735 (+) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein -
  V5G23_RS07625 (V5G23_07625) yyaC 1492772..1493389 (-) 618 WP_003178032.1 spore protease YyaC -
  V5G23_RS07630 (V5G23_07630) - 1493693..1494706 (+) 1014 WP_003178030.1 hypothetical protein -
  V5G23_RS07635 (V5G23_07635) - 1494794..1495000 (+) 207 WP_011201785.1 DUF951 domain-containing protein -
  V5G23_RS07640 (V5G23_07640) ychF 1495179..1496279 (+) 1101 WP_003178027.1 redox-regulated ATPase YchF -
  V5G23_RS07645 (V5G23_07645) rpsF 1496393..1496680 (+) 288 WP_003178026.1 30S ribosomal protein S6 -
  V5G23_RS07650 (V5G23_07650) ssbA 1496727..1497239 (+) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  V5G23_RS07655 (V5G23_07655) rpsR 1497291..1497530 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  V5G23_RS07660 (V5G23_07660) - 1497608..1498909 (-) 1302 WP_009330030.1 MFS transporter -
  V5G23_RS07665 (V5G23_07665) - 1499125..1500591 (+) 1467 WP_003178015.1 SulP family inorganic anion transporter -
  V5G23_RS07670 (V5G23_07670) - 1500609..1501028 (+) 420 WP_003178013.1 universal stress protein -
  V5G23_RS07675 (V5G23_07675) - 1501071..1501548 (-) 478 Protein_1460 spore coat protein -
  V5G23_RS07680 (V5G23_07680) - 1501706..1501846 (+) 141 WP_003178008.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=935345 V5G23_RS07650 WP_003178024.1 1496727..1497239(+) (ssbA) [Bacillus licheniformis strain CP13]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=935345 V5G23_RS07650 WP_003178024.1 1496727..1497239(+) (ssbA) [Bacillus licheniformis strain CP13]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAAAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAATGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382