Detailed information NTG0935344

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: V5G23_RS07545
• Genome accession: NZ_CP144925
• Coordinates: 1477198..1478310 (-)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus licheniformis strain CP13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1472198..1483310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5G23_RS07530 (V5G23_07530)	gyrA	1472306..1474774 (-)	2469	WP_003178095.1	DNA gyrase subunit A	-
V5G23_RS07535 (V5G23_07535)	gyrB	1474965..1476878 (-)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
V5G23_RS07540 (V5G23_07540)	-	1476938..1477180 (-)	243	WP_003178090.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
V5G23_RS07545 (V5G23_07545)	recF	1477198..1478310 (-)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
V5G23_RS07550 (V5G23_07550)	yaaA	1478327..1478542 (-)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
V5G23_RS07555 (V5G23_07555)	dnaN	1478710..1479846 (-)	1137	WP_075178300.1	DNA polymerase III subunit beta	-
V5G23_RS07560 (V5G23_07560)	dnaA	1480023..1481363 (-)	1341	WP_003178077.1	chromosomal replication initiator protein DnaA	-
V5G23_RS07565 (V5G23_07565)	rpmH	1482003..1482137 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
V5G23_RS07570 (V5G23_07570)	rnpA	1482222..1482581 (+)	360	WP_003178055.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=935344 V5G23_RS07545 WP_003178089.1 1477198..1478310(-) (recF) [Bacillus licheniformis strain CP13]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=935344 V5G23_RS07545 WP_003178089.1 1477198..1478310(-) (recF) [Bacillus licheniformis strain CP13]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGACTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886