Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V5G23_RS06960 Genome accession   NZ_CP144925
Coordinates   1368002..1369381 (-) Length   459 a.a.
NCBI ID   WP_003178276.1    Uniprot ID   A0AAP9UTP9
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1363002..1374381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS06940 (V5G23_06940) ispF 1364521..1364997 (-) 477 WP_003178280.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  V5G23_RS06945 (V5G23_06945) ispD 1364990..1365685 (-) 696 WP_003178279.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V5G23_RS06950 (V5G23_06950) - 1365702..1366790 (-) 1089 WP_009330350.1 PIN/TRAM domain-containing protein -
  V5G23_RS06955 (V5G23_06955) disA 1366922..1367998 (-) 1077 WP_003178277.1 DNA integrity scanning diadenylate cyclase DisA -
  V5G23_RS06960 (V5G23_06960) radA 1368002..1369381 (-) 1380 WP_003178276.1 DNA repair protein RadA Machinery gene
  V5G23_RS06965 (V5G23_06965) clpC 1369461..1371893 (-) 2433 WP_003178275.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  V5G23_RS06970 (V5G23_06970) - 1371890..1372981 (-) 1092 WP_003178273.1 protein arginine kinase -
  V5G23_RS06975 (V5G23_06975) - 1372981..1373535 (-) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  V5G23_RS06980 (V5G23_06980) - 1373550..1374014 (-) 465 WP_003178269.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49818.25 Da        Isoelectric Point: 7.4339

>NTDB_id=935340 V5G23_RS06960 WP_003178276.1 1368002..1369381(-) (radA) [Bacillus licheniformis strain CP13]
MAKTKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=935340 V5G23_RS06960 WP_003178276.1 1368002..1369381(-) (radA) [Bacillus licheniformis strain CP13]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATCCGCCAAGTGGATGGGGAAATGCCCCGGATG
CGGTGCATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATTGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTTGGCGAATTC
AACCGCGTCTTGGGAAACGGCATCGTCAAAGGTTCACTTGTTTTAATCGGAGGCGACCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGCGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGTATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCATCATTCGTAGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATCACATCCGC
TCCGGGCAGCGTCTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCAATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTACTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAGGTGCTGAATCCGTCAGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCGGCCG
GATCGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCCAGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGCTTT
GGGAATCCGCGCCGGATGGCAACCGGGATTGATCATAACCGCGTCTCATTGCTAATGGCAGTTTTAGAAAAAAGGGTTGG
ACTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGAGGCGTCAAGCTGGACGAGCCAGCGATTGACCTCGCCG
TTGCAGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGAGAAGTCGGATTGACA
GGGGAGGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTAGAAGGATGGACAAAGCCGAAAGGAATCGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.266

99.782

0.911
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61