Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V5G23_RS05185 Genome accession   NZ_CP144925
Coordinates   1009417..1010370 (-) Length   317 a.a.
NCBI ID   WP_003178937.1    Uniprot ID   A0AAP9UU73
Organism   Bacillus licheniformis strain CP13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1004417..1015370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS05165 (V5G23_05165) - 1005173..1006594 (+) 1422 WP_003178944.1 MDR family MFS transporter -
  V5G23_RS05170 (V5G23_05170) - 1006763..1007710 (-) 948 WP_003178942.1 siderophore ABC transporter substrate-binding protein -
  V5G23_RS05175 (V5G23_05175) - 1007725..1008483 (-) 759 WP_003178940.1 ABC transporter ATP-binding protein -
  V5G23_RS05180 (V5G23_05180) - 1008483..1009427 (-) 945 WP_075218294.1 iron chelate uptake ABC transporter family permease subunit -
  V5G23_RS05185 (V5G23_05185) ceuB 1009417..1010370 (-) 954 WP_003178937.1 ABC transporter permease Machinery gene
  V5G23_RS05190 (V5G23_05190) - 1010647..1012008 (+) 1362 WP_075218295.1 aspartate kinase -
  V5G23_RS05195 (V5G23_05195) - 1012144..1012635 (+) 492 Protein_1003 MCP four helix bundle domain-containing protein -
  V5G23_RS05200 (V5G23_05200) - 1012752..1012871 (+) 120 Protein_1004 hypothetical protein -
  V5G23_RS05205 (V5G23_05205) - 1012884..1013861 (+) 978 WP_232513224.1 methyl-accepting chemotaxis protein -
  V5G23_RS05210 (V5G23_05210) - 1013894..1015321 (-) 1428 WP_009330185.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35169.59 Da        Isoelectric Point: 10.1728

>NTDB_id=935336 V5G23_RS05185 WP_003178937.1 1009417..1010370(-) (ceuB) [Bacillus licheniformis strain CP13]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLKYKRVVNIGLIIVSIISSVVILTIGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=935336 V5G23_RS05185 WP_003178937.1 1009417..1010370(-) (ceuB) [Bacillus licheniformis strain CP13]
ATGAAATTACGATACCTATTGCTAATGCTCATCATTCTTTCATTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTTTTCCGCTTTAATGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCAACCACCGCT
GGAACGATGGATTGGGCTCGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGGATAGTAGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATTT
TCATCCCTCTCGTCGGAATGATGCTCGGGAGCGTTGTCAGCGCCATCTCTACTTTCATGGCTTATCAGTACAATATTATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTCACGTTGGCCGGGATGGGGGAGTCATTTTCCATCAATCTTGGTT
TGAAATACAAGCGGGTGGTCAATATCGGGCTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGATCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATTTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511