Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V5G20_RS16465 Genome accession   NZ_CP144922
Coordinates   3462034..3463758 (-) Length   574 a.a.
NCBI ID   WP_338461350.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain CP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3457034..3468758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G20_RS16440 (V5G20_16440) - 3457037..3457615 (-) 579 WP_003387239.1 carbonic anhydrase -
  V5G20_RS16445 (V5G20_16445) - 3457792..3458556 (-) 765 WP_338461346.1 metallophosphoesterase family protein -
  V5G20_RS16450 (V5G20_16450) - 3458705..3459055 (+) 351 WP_243014071.1 hypothetical protein -
  V5G20_RS16455 (V5G20_16455) spo0A 3459423..3460211 (-) 789 WP_024984907.1 sporulation transcription factor Spo0A -
  V5G20_RS16460 (V5G20_16460) spoIVB 3460458..3461789 (-) 1332 WP_003387243.1 SpoIVB peptidase -
  V5G20_RS16465 (V5G20_16465) recN 3462034..3463758 (-) 1725 WP_338461350.1 DNA repair protein RecN Machinery gene
  V5G20_RS16470 (V5G20_16470) argR 3463775..3464224 (-) 450 WP_003387250.1 transcriptional regulator ArgR -
  V5G20_RS16475 (V5G20_16475) - 3464229..3465086 (-) 858 WP_024984906.1 NAD(+)/NADH kinase -
  V5G20_RS16480 (V5G20_16480) - 3465197..3466009 (-) 813 WP_172920381.1 TlyA family RNA methyltransferase -
  V5G20_RS16485 (V5G20_16485) dxs 3466006..3467892 (-) 1887 WP_024984905.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64917.96 Da        Isoelectric Point: 4.9842

>NTDB_id=935303 V5G20_RS16465 WP_338461350.1 3462034..3463758(-) (recN) [Brevibacillus borstelensis strain CP19]
MLLELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASTDFVRYGETRAEVEGLFELPSGHPAFSVC
ESFGVQVEQDNTLVVRRDISSQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHIHWLDSYGEKEMGSAK
QEYAQLFGLYSKTRQDLERMSKNERELVQRIDLLQYQLNEIEAASLAPGEDEKLLQQRKKWMNIEKVFAGIQDAYRALHG
DQRGSEWLGHAMSELERIVSYDDQLGPILETVQSAYYQVEDAVHQLRQLSDRLDFEPEQLQEVERRLDLIQTLKRKYGKN
VDDILEYAATIQDELDEMHHYDDRLQQLEKRLVELAADLAVEALELSMIRRSCAERLAKEIEQQLRELHMERARFAIDVR
QIPDENGVEIEGAKWRVDANGIDTVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLARVALQRQVLCITHLPQVASLADAHFLIQKEMSENETMTLVHSLREEERVTELARMLSGAEVTAKTEEHA
REMITLGRQRKAAK

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=935303 V5G20_RS16465 WP_338461350.1 3462034..3463758(-) (recN) [Brevibacillus borstelensis strain CP19]
ATGCTGCTGGAGCTTTCCATACGCAATTTTGCGATCATCAAATCCGTAACCATTTCTTTTCAAAAAGGCTTAAACATTTT
GACCGGGGAGACCGGTGCGGGAAAATCGATTATTATTGATGCGCTCGGCCTGCTGCTGGGAGGCCGGGCCTCGACTGATT
TTGTCCGGTACGGGGAAACGCGGGCAGAAGTCGAGGGTCTGTTTGAGCTGCCCAGCGGCCATCCGGCCTTTTCGGTTTGC
GAGAGCTTCGGTGTTCAGGTAGAGCAGGACAACACGCTTGTCGTCAGGCGCGATATTTCCAGTCAGGGAAAAAGCATCAT
CCGCATCAACGGACAGCTTGTCACCCTTGCCATGCTCAGGGAGCTGGGCCCCTGGCTGGTGACCGTCCACGGACAGCATG
ACACTCATATGCTGATGCAGGCGGACAAGCACATACACTGGCTCGATTCCTACGGCGAAAAAGAAATGGGATCGGCCAAA
CAGGAGTATGCACAGTTGTTTGGCCTCTATTCAAAGACGAGACAGGATCTGGAACGGATGTCCAAAAACGAACGGGAGCT
CGTTCAGCGGATCGATCTGCTGCAATACCAGTTAAACGAAATCGAGGCAGCATCCCTGGCGCCCGGAGAGGACGAAAAGC
TGCTTCAGCAGAGAAAGAAATGGATGAACATTGAGAAGGTATTTGCAGGCATCCAGGACGCCTACCGGGCCCTGCACGGC
GACCAGCGCGGAAGCGAGTGGCTTGGACATGCCATGAGCGAGCTGGAACGAATTGTCTCCTATGATGATCAGTTGGGACC
GATACTCGAGACGGTCCAAAGCGCATACTATCAGGTAGAAGATGCAGTGCACCAGCTCAGACAGCTCTCCGACCGGCTCG
ATTTTGAACCGGAGCAGCTTCAGGAAGTAGAGAGAAGGCTGGATTTGATCCAGACGCTGAAGAGAAAATACGGGAAAAAT
GTAGACGATATTCTGGAATATGCGGCAACGATTCAGGATGAATTGGACGAAATGCATCATTACGATGACCGTCTGCAGCA
ACTGGAAAAACGGCTGGTTGAGCTGGCTGCCGATCTCGCCGTCGAGGCACTGGAGCTGTCCATGATCCGCCGCAGCTGTG
CAGAAAGGCTTGCCAAGGAAATTGAGCAGCAGCTTCGCGAATTACATATGGAGCGCGCCCGCTTCGCCATCGATGTCCGG
CAAATTCCCGATGAAAACGGGGTGGAAATCGAGGGAGCCAAATGGCGCGTCGATGCCAACGGAATCGATACCGTCGAGTT
TTTAATTTCGCCCAATCCGGGAGAGCCGCTGCGCCCTTTGGCCAAAATCGCTTCCGGCGGTGAGCTTTCGCGGGTCATGC
TGGCGATCAAGACGATTTTGGCCGGTACCGACCAGGTGCAGACCTTGATTTTCGACGAGGTCGATACAGGGGTAAGCGGA
AGGGCTGCCCAAGCCATTGCTGAAAAGCTTGCACGTGTCGCGCTCCAGCGTCAGGTGTTGTGCATCACACACCTTCCGCA
GGTAGCTTCTCTCGCGGATGCCCATTTCCTGATTCAAAAGGAGATGAGCGAGAACGAAACAATGACGCTCGTTCACAGCT
TACGCGAGGAGGAGCGGGTCACCGAGCTGGCCCGCATGCTGAGCGGAGCCGAGGTTACAGCAAAAACAGAAGAGCACGCG
CGCGAGATGATCACGCTCGGGCGACAACGAAAAGCTGCCAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.306

100

0.495