Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   V5G21_RS01545 Genome accession   NZ_CP144921
Coordinates   252039..252221 (-) Length   60 a.a.
NCBI ID   WP_035201913.1    Uniprot ID   -
Organism   Shouchella rhizosphaerae strain CP20     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 247039..257221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G21_RS01525 (V5G21_01525) - 248834..249003 (-) 170 Protein_293 helix-turn-helix domain-containing protein -
  V5G21_RS01530 (V5G21_01530) fabF 249154..250395 (-) 1242 WP_011247389.1 beta-ketoacyl-ACP synthase II -
  V5G21_RS01535 (V5G21_01535) - 250443..251378 (-) 936 WP_035201766.1 beta-ketoacyl-ACP synthase III -
  V5G21_RS01540 (V5G21_01540) - 251573..251842 (+) 270 WP_035201768.1 hypothetical protein -
  V5G21_RS01545 (V5G21_01545) comZ 252039..252221 (-) 183 WP_035201913.1 ComZ family protein Regulator
  V5G21_RS01550 (V5G21_01550) - 252367..253974 (+) 1608 WP_011247392.1 peptide chain release factor 3 -
  V5G21_RS01555 (V5G21_01555) - 254030..254869 (-) 840 WP_011247393.1 NAD(P)-dependent oxidoreductase -
  V5G21_RS01560 (V5G21_01560) - 254923..255615 (-) 693 WP_011247394.1 hypothetical protein -
  V5G21_RS01565 (V5G21_01565) argF 255759..256703 (-) 945 WP_011247395.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7018.17 Da        Isoelectric Point: 4.5738

>NTDB_id=935239 V5G21_RS01545 WP_035201913.1 252039..252221(-) (comZ) [Shouchella rhizosphaerae strain CP20]
MEQHERNLKFMEIAMKHVPEARKLLEGKGIEVTMDELQPLLSLLLHVMNEAYELGLNEQE

Nucleotide


Download         Length: 183 bp        

>NTDB_id=935239 V5G21_RS01545 WP_035201913.1 252039..252221(-) (comZ) [Shouchella rhizosphaerae strain CP20]
ATGGAGCAACACGAAAGAAATTTGAAGTTTATGGAAATCGCCATGAAGCATGTACCTGAAGCGCGTAAATTGCTAGAAGG
CAAAGGCATAGAAGTAACAATGGATGAATTGCAGCCGCTGCTTTCATTGTTGCTTCATGTGATGAACGAAGCATACGAAC
TTGGGTTAAACGAGCAGGAATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.786

93.333

0.483