Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACD269_RS07180 Genome accession   NZ_CP168260
Coordinates   1393990..1394712 (-) Length   240 a.a.
NCBI ID   WP_050210506.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388990..1399712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD269_RS07170 (ACD269_07170) - 1391564..1392730 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  ACD269_RS07175 (ACD269_07175) - 1392738..1393832 (-) 1095 WP_000031968.1 cystathionine gamma-synthase -
  ACD269_RS07180 (ACD269_07180) rcrP 1393990..1394712 (-) 723 WP_050210506.1 ABC transporter ATP-binding protein Regulator
  ACD269_RS07185 (ACD269_07185) - 1394899..1395665 (-) 767 Protein_1421 ABC transporter transmembrane domain-containing protein -
  ACD269_RS07190 (ACD269_07190) amiA 1395837..1397795 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  ACD269_RS07195 (ACD269_07195) - 1397998..1399620 (-) 1623 WP_000017807.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27214.13 Da        Isoelectric Point: 5.4335

>NTDB_id=935237 ACD269_RS07180 WP_050210506.1 1393990..1394712(-) (rcrP) [Streptococcus pneumoniae strain FC2]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGYILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=935237 ACD269_RS07180 WP_050210506.1 1393990..1394712(-) (rcrP) [Streptococcus pneumoniae strain FC2]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGATATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362