Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACD269_RS02495 Genome accession   NZ_CP168260
Coordinates   484648..485697 (+) Length   349 a.a.
NCBI ID   WP_000653750.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 479648..490697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD269_RS02465 (ACD269_02465) - 480667..481071 (+) 405 WP_000343113.1 hypothetical protein -
  ACD269_RS02470 (ACD269_02470) dnaJ 481286..482422 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ACD269_RS02475 (ACD269_02475) - 482744..482983 (-) 240 WP_134743919.1 hypothetical protein -
  ACD269_RS02480 (ACD269_02480) - 483145..483432 (-) 288 WP_000777760.1 hypothetical protein -
  ACD269_RS02485 (ACD269_02485) - 483442..483852 (-) 411 WP_001278304.1 HIT family protein -
  ACD269_RS02490 (ACD269_02490) pptA 483920..484651 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ACD269_RS02495 (ACD269_02495) pptB 484648..485697 (+) 1050 WP_000653750.1 ABC transporter permease Regulator
  ACD269_RS02500 (ACD269_02500) - 485760..486089 (-) 330 WP_000132584.1 hypothetical protein -
  ACD269_RS02505 (ACD269_02505) - 486366..486704 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  ACD269_RS02510 (ACD269_02510) comE/blpR 486709..487446 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  ACD269_RS02515 (ACD269_02515) - 487460..488800 (+) 1341 WP_001099895.1 sensor histidine kinase -
  ACD269_RS02520 (ACD269_02520) blpC 488845..489000 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  ACD269_RS02525 (ACD269_02525) - 489057..490418 (-) 1362 WP_050210660.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40500.66 Da        Isoelectric Point: 10.0620

>NTDB_id=935197 ACD269_RS02495 WP_000653750.1 484648..485697(+) (pptB) [Streptococcus pneumoniae strain FC2]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEAIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
ILAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=935197 ACD269_RS02495 WP_000653750.1 484648..485697(+) (pptB) [Streptococcus pneumoniae strain FC2]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGCAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATCCTAAAGGCTGTTCAGAAGGTGCCTGGAAAGA
TTTGGCAAAATCTCTATCTACGTTCTTATCTGCGAAATGGAGACCTCTTTGCGCTCAGTCTCCGTCTGCTCTTGCTTTCC
ATACTGGCGCAGGTATTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTGGTTCTCTTTAACTACCTCTTGCTCTTTCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGCTGTAGTCCGAGGATTGACCAGTTTTGTTTTACTGGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467