Detailed information NTG0935189

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: V5G22_RS07560
• Genome accession: NZ_CP144920
• Coordinates: 1490777..1491889 (-)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus licheniformis strain CP26
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1485777..1496889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5G22_RS07545 (V5G22_07545)	gyrA	1485885..1488353 (-)	2469	WP_003178095.1	DNA gyrase subunit A	-
V5G22_RS07550 (V5G22_07550)	gyrB	1488544..1490457 (-)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
V5G22_RS07555 (V5G22_07555)	-	1490517..1490759 (-)	243	WP_003178090.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
V5G22_RS07560 (V5G22_07560)	recF	1490777..1491889 (-)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
V5G22_RS07565 (V5G22_07565)	yaaA	1491906..1492121 (-)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
V5G22_RS07570 (V5G22_07570)	dnaN	1492289..1493425 (-)	1137	WP_003178080.1	DNA polymerase III subunit beta	-
V5G22_RS07575 (V5G22_07575)	dnaA	1493602..1494942 (-)	1341	WP_009330034.1	chromosomal replication initiator protein DnaA	-
V5G22_RS07580 (V5G22_07580)	rpmH	1495582..1495716 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
V5G22_RS07585 (V5G22_07585)	rnpA	1495801..1496160 (+)	360	WP_003178055.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=935189 V5G22_RS07560 WP_003178089.1 1490777..1491889(-) (recF) [Bacillus licheniformis strain CP26]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=935189 V5G22_RS07560 WP_003178089.1 1490777..1491889(-) (recF) [Bacillus licheniformis strain CP26]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886