Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACEN24_RS09540 Genome accession   NZ_CP168224
Coordinates   1969722..1970462 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C62     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964722..1975462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN24_RS09515 (ACEN24_09515) hemH 1965599..1966522 (-) 924 WP_000162890.1 ferrochelatase -
  ACEN24_RS09520 (ACEN24_09520) hemE 1966580..1967617 (-) 1038 WP_000233541.1 uroporphyrinogen decarboxylase -
  ACEN24_RS09525 (ACEN24_09525) - 1967607..1967693 (-) 87 WP_031875110.1 hypothetical protein -
  ACEN24_RS09530 (ACEN24_09530) traP 1967879..1968382 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  ACEN24_RS09535 (ACEN24_09535) - 1968506..1969729 (-) 1224 WP_001245763.1 ABC transporter permease -
  ACEN24_RS09540 (ACEN24_09540) pptA 1969722..1970462 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein Regulator
  ACEN24_RS09545 (ACEN24_09545) - 1970596..1971018 (+) 423 WP_000004981.1 HIT family protein -
  ACEN24_RS09550 (ACEN24_09550) - 1971160..1971525 (+) 366 WP_234726451.1 YtxH domain-containing protein -
  ACEN24_RS09555 (ACEN24_09555) - 1972258..1972815 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  ACEN24_RS09560 (ACEN24_09560) - 1973020..1973982 (+) 963 WP_000782130.1 foldase protein PrsA -
  ACEN24_RS09565 (ACEN24_09565) yhaM 1974103..1975044 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=935154 ACEN24_RS09540 WP_000216874.1 1969722..1970462(-) (pptA) [Staphylococcus aureus strain C62]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=935154 ACEN24_RS09540 WP_000216874.1 1969722..1970462(-) (pptA) [Staphylococcus aureus strain C62]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATATACGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545