Detailed information NTG0935146

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CVIC9261_RS01070
• Genome accession: NZ_CP144916
• Coordinates: 194287..195207 (-)
• Length: 306 a.a.
• NCBI ID: WP_086302903.1
• Uniprot ID: -
• Organism: Campylobacter vicugnae strain RM9261
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 189287..200207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVIC9261_RS01040 (CVIC9261_01040)	gmhB	189551..190048 (+)	498	WP_086257040.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CVIC9261_RS01045 (CVIC9261_01045)	rfaD	190045..191010 (+)	966	WP_086257041.1	ADP-glyceromanno-heptose 6-epimerase	-
CVIC9261_RS01050 (CVIC9261_01050)	rfaE1	191010..192386 (+)	1377	WP_086257043.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CVIC9261_RS01055 (CVIC9261_01055)	gmhA	192396..192953 (+)	558	WP_086257045.1	D-sedoheptulose 7-phosphate isomerase	-
CVIC9261_RS01060 (CVIC9261_01060)	-	192997..193188 (+)	192	WP_201791009.1	hypothetical protein	-
CVIC9261_RS01065 (CVIC9261_01065)	-	193140..194255 (+)	1116	WP_201791010.1	restriction endonuclease subunit S	-
CVIC9261_RS01070 (CVIC9261_01070)	waaF	194287..195207 (-)	921	WP_086302903.1	lipopolysaccharide heptosyltransferase II	Regulator
CVIC9261_RS01075 (CVIC9261_01075)	-	195191..196210 (-)	1020	WP_086302901.1	glycosyltransferase family 4 protein	-
CVIC9261_RS01080 (CVIC9261_01080)	-	196247..197308 (-)	1062	WP_086302899.1	glycosyltransferase family 9 protein	-
CVIC9261_RS01085 (CVIC9261_01085)	-	197305..198168 (-)	864	WP_086302897.1	lipid A biosynthesis lauroyl acyltransferase	-
CVIC9261_RS01090 (CVIC9261_01090)	waaC	198161..199126 (-)	966	WP_086302895.1	lipopolysaccharide heptosyltransferase I	-
CVIC9261_RS01095 (CVIC9261_01095)	-	199187..199996 (+)	810	WP_086254292.1	3'-5' exonuclease	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33905.53 Da
• Isoelectric Point: 9.8344

>NTDB_id=935146 CVIC9261_RS01070 WP_086302903.1 194287..195207(-) (waaF) [Campylobacter vicugnae strain RM9261]
MRIFIELPTWLGDGVMSSAAIANIRANFKDAKLTFFGSAASTALFANLGDIIIDESKKSKFRLAYLYKLAKSQPKFDAFI
SFRSHLASKALAFFIHARKSGVYKPINKSDHLVVDYLNFSSKALNIDILTNELELNFTPKKYTKPTLGLNPGATYGSAKR
WYPSYFADVAMSLSSKFDIVIFGGNGEKEICDEISEILTKNQISHKNLCAKTSIKELASYIAGLELFITNDSGPMHIAAA
FKVPTVALFGPTNFTRTSPYNNPKARLAHLNLPCMPCMKRVCPLGSHECMKELKPALALELTRQII

Nucleotide

• Length: 921 bp

>NTDB_id=935146 CVIC9261_RS01070 WP_086302903.1 194287..195207(-) (waaF) [Campylobacter vicugnae strain RM9261]
GTGAGAATATTCATTGAGCTACCAACATGGCTTGGCGATGGAGTGATGAGTAGTGCTGCTATTGCAAATATTAGGGCAAA
TTTTAAAGATGCAAAATTAACATTTTTTGGCTCTGCGGCTAGTACAGCTCTATTTGCTAATCTTGGCGATATCATAATAG
ATGAGTCCAAAAAATCTAAATTTCGCCTAGCATATCTATATAAATTAGCCAAATCCCAGCCTAAATTTGATGCATTTATC
AGCTTTAGAAGCCATCTAGCCTCAAAAGCATTGGCATTTTTTATCCACGCTAGAAAAAGTGGAGTATATAAACCAATTAA
TAAAAGTGATCATTTAGTAGTTGATTATCTAAATTTTAGTTCAAAAGCTTTAAATATAGATATTTTAACTAATGAACTTG
AGTTAAATTTTACTCCAAAAAAATATACAAAACCAACACTAGGTCTAAATCCAGGCGCAACATATGGAAGTGCTAAAAGA
TGGTATCCTAGCTATTTTGCCGATGTAGCAATGAGCTTAAGTAGTAAATTTGATATAGTTATCTTTGGCGGTAATGGTGA
AAAAGAGATTTGCGATGAAATTAGCGAAATTCTAACCAAAAATCAAATTTCGCATAAAAATCTATGCGCTAAAACATCAA
TCAAAGAGCTTGCTAGCTATATTGCCGGACTTGAGCTATTTATAACCAATGATAGCGGACCAATGCATATCGCAGCTGCT
TTTAAGGTGCCAACAGTTGCACTATTTGGCCCAACTAACTTTACTAGAACTAGCCCATATAATAATCCAAAAGCAAGACT
AGCACATCTAAATTTACCATGTATGCCATGTATGAAAAGGGTCTGTCCGCTAGGCTCTCATGAGTGTATGAAAGAGCTAA
AACCAGCCCTTGCATTAGAACTAACTAGGCAGATTATTTAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (103-285)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.152	100	0.487