Detailed information NTG0935133

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CVIC8835_RS01075
• Genome accession: NZ_CP144915
• Coordinates: 198599..199519 (-)
• Length: 306 a.a.
• NCBI ID: WP_086255689.1
• Uniprot ID: -
• Organism: Campylobacter vicugnae strain RM8835
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 193599..204519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVIC8835_RS01045 (CVIC8835_01045)	ccoS	194408..194641 (+)	234	WP_086249417.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
CVIC8835_RS01050 (CVIC8835_01050)	-	194711..195019 (-)	309	WP_086249418.1	c-type cytochrome	-
CVIC8835_RS01055 (CVIC8835_01055)	gmhB	195180..195686 (+)	507	WP_086256503.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CVIC8835_RS01060 (CVIC8835_01060)	rfaD	195683..196648 (+)	966	WP_338433754.1	ADP-glyceromanno-heptose 6-epimerase	-
CVIC8835_RS01065 (CVIC8835_01065)	rfaE1	196648..198024 (+)	1377	WP_086255685.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CVIC8835_RS01070 (CVIC8835_01070)	gmhA	198034..198591 (+)	558	WP_086255687.1	D-sedoheptulose 7-phosphate isomerase	-
CVIC8835_RS01075 (CVIC8835_01075)	waaF	198599..199519 (-)	921	WP_086255689.1	glycosyltransferase family 9 protein	Regulator
CVIC8835_RS01080 (CVIC8835_01080)	-	199503..200522 (-)	1020	WP_086255690.1	glycosyltransferase family 4 protein	-
CVIC8835_RS01085 (CVIC8835_01085)	-	200559..201620 (-)	1062	WP_086255691.1	glycosyltransferase family 9 protein	-
CVIC8835_RS01090 (CVIC8835_01090)	-	201617..202480 (-)	864	WP_086255693.1	lipid A biosynthesis lauroyl acyltransferase	-
CVIC8835_RS01095 (CVIC8835_01095)	waaC	202473..203438 (-)	966	WP_086255694.1	lipopolysaccharide heptosyltransferase I	-
CVIC8835_RS01100 (CVIC8835_01100)	-	203499..204308 (+)	810	WP_086255695.1	3'-5' exonuclease	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33761.32 Da
• Isoelectric Point: 9.8429

>NTDB_id=935133 CVIC8835_RS01075 WP_086255689.1 198599..199519(-) (waaF) [Campylobacter vicugnae strain RM8835]
MRIFIELPTWLGDGVMSSAAIANIRANFKDAKLTFFGSAASTALFANLGDIIIDESKKSKFRLAYLYKLAKSQPKFDAFI
SFRSHLASKALAFFIHARKSGVYKPINKSDHLVVDYLNFSAKALNIDILTNELELNFTPKKYTKPTLGLNPGATYGSAKR
WYPSYFADVAMSLSSKFDIVIFGGNGEKEICDEISEILTKNQISHKNLCAKTSIKELASYIAGLGLFITNDSGPMHIAAA
FKVPTVALFGPTNFTRTSPYNNPNARLAHLNLPCMPCMKRVCPLGSHECMKELKPALALELARQTI

Nucleotide

• Length: 921 bp

>NTDB_id=935133 CVIC8835_RS01075 WP_086255689.1 198599..199519(-) (waaF) [Campylobacter vicugnae strain RM8835]
GTGAGAATATTCATTGAGCTACCAACATGGCTTGGCGATGGAGTGATGAGTAGTGCTGCTATTGCAAATATTAGGGCAAA
TTTTAAAGATGCAAAATTAACATTTTTTGGCTCTGCGGCTAGTACAGCACTATTTGCTAATCTTGGCGATATCATAATCG
ATGAGTCCAAGAAATCCAAATTCCGCTTAGCATATCTATATAAATTAGCCAAATCCCAGCCTAAATTTGATGCATTTATT
AGCTTTAGAAGCCATCTAGCCTCAAAAGCTTTGGCATTTTTTATCCACGCTAGAAAAAGTGGAGTCTATAAGCCAATTAA
TAAAAGCGATCATTTAGTAGTTGATTATCTAAATTTTAGTGCAAAAGCTTTAAATATAGATATTTTAACTAATGAACTTG
AGTTAAATTTTACTCCAAAAAAATATACAAAACCAACACTAGGGCTAAATCCAGGCGCAACATATGGAAGTGCTAAAAGA
TGGTATCCAAGCTATTTTGCCGATGTAGCAATGAGCCTAAGTAGTAAATTTGATATAGTTATCTTTGGTGGTAATGGTGA
AAAAGAGATTTGCGATGAAATTAGCGAAATTCTAACCAAAAATCAAATTTCACATAAAAATCTATGTGCTAAAACATCAA
TAAAAGAGCTTGCTAGCTATATTGCCGGACTTGGGCTTTTTATAACCAATGATAGCGGACCAATGCATATCGCAGCTGCT
TTTAAGGTGCCAACAGTTGCACTATTTGGTCCTACAAATTTTACTAGAACTAGCCCATATAATAATCCAAATGCTAGATT
AGCACATCTAAATTTACCATGTATGCCATGTATGAAAAGAGTCTGTCCGCTAGGCTCTCATGAATGTATGAAAGAGCTAA
AACCAGCCCTTGCATTAGAGCTAGCTAGACAGACTATATAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (102-285)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.785	100	0.493