Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FTX54_RS07455 Genome accession   NZ_CP144914
Coordinates   1640724..1642448 (+) Length   574 a.a.
NCBI ID   WP_147802862.1    Uniprot ID   A0A5C7FJP8
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1635724..1647448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS07435 (FTX54_007435) - 1636605..1637213 (+) 609 WP_147803128.1 hypothetical protein -
  FTX54_RS07440 (FTX54_007440) dxs 1637223..1639112 (+) 1890 WP_147802865.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FTX54_RS07445 (FTX54_007445) - 1639113..1639922 (+) 810 WP_147802864.1 TlyA family RNA methyltransferase -
  FTX54_RS07450 (FTX54_007450) argR 1639947..1640396 (+) 450 WP_147802863.1 transcriptional regulator ArgR -
  FTX54_RS07455 (FTX54_007455) recN 1640724..1642448 (+) 1725 WP_147802862.1 DNA repair protein RecN Machinery gene
  FTX54_RS07460 (FTX54_007460) spo0A 1642575..1643351 (+) 777 WP_147802861.1 sporulation transcription factor Spo0A -
  FTX54_RS07465 (FTX54_007465) - 1643385..1643636 (-) 252 WP_147802860.1 DUF2627 domain-containing protein -
  FTX54_RS07470 (FTX54_007470) - 1643762..1645759 (+) 1998 WP_147802859.1 sigma-54-dependent Fis family transcriptional regulator -
  FTX54_RS07475 (FTX54_007475) - 1645890..1646792 (+) 903 WP_147802858.1 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64910.74 Da        Isoelectric Point: 4.7944

>NTDB_id=935110 FTX54_RS07455 WP_147802862.1 1640724..1642448(+) (recN) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MLMELSIRNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAIGLLIGGRGSVDFVRHGSKRAEIEGLFSIEQPVSEEMKD
LFESIGVSMEEEGTIVLKREITMQGKSVCRINGKLTTLGILRQVGQQLVDIHGQHEHQQLLQTEKHGMFLDRFAEEKLKK
AKVEYKNLYDRFQKKRQQLKQLSENEQQMAQRLDLIQYQYEEIKQAQLQPNEDNELAEAKRKLNNSEGLYQNVHGAYEAL
YGDGKGMEWVMTAMNQVEEAAELDPELEKLKESVTNSYYSLEEASFSLRDYYESIEFDPEKLDAIESRLSEINQLKRKYG
GSVEEIMEYYASIEEELDTLTNREQRLDQWQRELETTAEDLFVEGAHISSIRKKAAEELKHAIQQQLKDLYMTETLFEVK
IQSALKEELTADKLVTNHPFLRSGIDVIEFEVATNKGEPLKSLAKVASGGEISRMILALKSILAKHEGVTSLIFDEVDSG
VSGRVAQAIAAKIHTLAQGSQVLCITHLPQVAAMADIHLFISKKEKSGRTITDVRPLTVNEQTEEVGRMISGIEITDLTR
EHAKELIDQAKVKK

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=935110 FTX54_RS07455 WP_147802862.1 1640724..1642448(+) (recN) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
GTGTTAATGGAACTTTCGATCAGGAATTTTGCTATCATAGACGAATTGACTGTTTCTTTTGAAGAAGGGCTGACAGTACT
TACTGGAGAAACAGGCGCGGGAAAATCAATAATAATTGATGCTATAGGACTTCTTATCGGAGGTAGAGGATCCGTCGATT
TCGTAAGGCATGGCAGCAAACGTGCAGAGATCGAAGGGTTATTTTCTATAGAACAGCCTGTTTCAGAAGAAATGAAAGAT
CTTTTCGAGAGTATCGGGGTTTCAATGGAGGAAGAAGGAACGATTGTATTAAAAAGGGAAATAACGATGCAGGGGAAAAG
TGTCTGCCGGATTAATGGAAAATTAACTACTTTAGGCATACTCAGGCAGGTCGGCCAGCAGCTGGTCGATATTCATGGTC
AGCACGAACATCAGCAGCTTCTTCAGACGGAAAAGCATGGAATGTTTCTCGACCGGTTTGCAGAAGAAAAGCTTAAAAAG
GCAAAAGTAGAATATAAAAATTTGTATGACCGCTTTCAGAAAAAGCGACAGCAGCTGAAGCAGCTCTCGGAAAATGAGCA
GCAGATGGCTCAAAGACTGGACCTTATCCAATATCAGTATGAAGAGATTAAACAGGCGCAGCTGCAGCCGAACGAGGATA
ATGAGCTGGCGGAAGCTAAAAGGAAATTAAATAATAGTGAAGGACTTTATCAGAATGTTCACGGTGCCTACGAAGCTCTC
TATGGAGACGGTAAAGGCATGGAATGGGTCATGACGGCTATGAATCAAGTGGAAGAAGCAGCAGAATTGGATCCTGAGCT
GGAGAAATTAAAAGAATCTGTAACGAACAGTTATTACTCGCTCGAAGAAGCTTCGTTTTCATTAAGAGATTATTATGAGT
CGATTGAATTTGACCCTGAAAAACTGGATGCGATCGAGTCAAGACTGAGCGAAATTAATCAGCTTAAGCGTAAGTATGGA
GGTTCTGTGGAAGAAATAATGGAATACTATGCATCTATAGAAGAGGAACTGGATACGCTTACTAATAGAGAACAAAGGCT
TGATCAATGGCAGCGGGAATTGGAAACGACAGCCGAAGATCTTTTTGTAGAAGGGGCGCATATCAGCAGCATTCGTAAAA
AGGCTGCGGAAGAACTCAAACACGCGATCCAACAGCAGCTGAAAGATTTATACATGACAGAGACTCTTTTCGAAGTGAAA
ATACAATCAGCTTTGAAGGAAGAATTAACCGCAGACAAGCTTGTTACCAATCACCCTTTTCTCCGGTCCGGTATAGATGT
GATTGAGTTTGAAGTAGCAACTAATAAAGGGGAGCCGTTGAAGTCTCTTGCGAAAGTAGCTTCGGGGGGCGAAATTTCAA
GAATGATTTTAGCGCTTAAATCCATTTTGGCGAAACATGAGGGAGTTACTTCACTTATTTTTGACGAAGTAGATTCAGGT
GTGAGTGGGAGAGTCGCTCAGGCTATTGCAGCAAAGATCCATACTCTGGCACAAGGTTCCCAGGTTCTGTGTATCACTCA
TCTTCCACAGGTGGCTGCGATGGCTGATATTCATTTATTTATTTCCAAAAAAGAAAAAAGCGGCAGGACGATTACCGATG
TACGTCCGTTAACAGTGAATGAGCAGACGGAAGAAGTAGGAAGAATGATATCAGGGATAGAAATAACCGATTTAACCAGA
GAACATGCTAAAGAATTAATTGATCAGGCGAAAGTAAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FJP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.356

100

0.54